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TheJacksonLaboratory / HPOworkbench

Human Phenotype Ontology Workbench
http://hpo-workbench.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Import local hp obo file not working #7

Closed cmungall closed 6 years ago

cmungall commented 6 years ago

image

I get:

image

First, it's not clear why it's complaining about the annot file when I'm refreshing the ont file

Second, the file is actually there:

$ ls -alt ~/.hpoworkbench/phenotype_annotation.tab 
-rw-r--r--  1 cjm  staff  18896952 Jan  3 08:57 /Users/cjm/.hpoworkbench/phenotype_annotation.tab
cmungall commented 6 years ago

This still happens after I refresh the annot file

cmungall commented 6 years ago

console log not much help:

 INFO - 2018-01-15 10:14:41 - Parsing OBO file /Users/cjm/tmp/hp.obo...
pnrobinson commented 6 years ago

That is working for me. One thing is that current you need to restart the program after importing hp.obo and phenotype_annotation.tab the first time. I will fix this.

cmungall commented 6 years ago

I had the same error after quitting and restarting...

pnrobinson commented 6 years ago

This is working now, please retry.