Closed justaddcoffee closed 4 years ago
We should emit an error message and die on a runtime exception?
Perhaps poorly phrased on my part - we should die with an error message about the user not setting the exomiser data directory, probably while the command line options are being parsed (instead of waiting to die later with a NullPointerException
)
For example, using the command (incorrectly, without the
-e
flag):java -jar target/LIRICAL.jar phenopacket -p simple_config.txt
we get aNullPointerException
. Probably should instead emit message about not being able to find exomiser data.Here's the config file used in the command above.