search

TheJacksonLaboratory / LIRICAL

LIkelihood Ratio Interpretation of Clinical AbnormaLities
https://thejacksonlaboratory.github.io/LIRICAL/stable
Other
22 stars 11 forks source link

logger error #490

Closed kingmanzhang closed 4 years ago

kingmanzhang commented 4 years ago

When I am running LIRICAL download, the first logger message is error. Download is successful. Not sure what the error is for.

[ERROR] HpoDownloader - HpoDownloader.javaorg.monarchinitiative.lirical.io.HpoDownloader.(HpoDownloader.java:47) - overwrite=false [==================================================] 100%
[INFO] Downloaded hp.obo [==================================================] 100%
[INFO] Downloaded phenotype.hpoa [INFO] Downloaded Homo_sapiens_gene_info.gz [INFO] Downloaded mim2gene_medgen LIRICAL: Elapsed time was 8.477 seconds.

justaddcoffee commented 4 years ago

[ERROR] HpoDownloader - HpoDownloader.javaorg.monarchinitiative.lirical.io.HpoDownloader.(HpoDownloader.java:47) - overwrite=false

That is a call to error() that should be a call to info() - should be harmless, but probably should change this. Made a PR: https://github.com/TheJacksonLaboratory/LIRICAL/pull/491

pnrobinson commented 4 years ago

thanks, @justaddcoffee! fixed!