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TheJacksonLaboratory / LIRICAL

LIkelihood Ratio Interpretation of Clinical AbnormaLities
https://thejacksonlaboratory.github.io/LIRICAL/stable
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Tutorial: Running LIRICAL #499

Closed vidarmehr closed 4 years ago

vidarmehr commented 4 years ago

@pnrobinson $ java -jar LIRICAL.java -p LDS2.json -x LDS2

should be changed to:

$ java -jar target/LIRICAL.jar phenopacket -p LDS2.json -x LDS2 -e /path/to/exomiser-data/

vidarmehr commented 4 years ago

@pnrobinson Maybe have another command when the vcf file is not available. $ java -jar target/LIRICAL.jar phenopacket -p LDS2.json -x LDS2

pnrobinson commented 4 years ago

fixed!

vidarmehr commented 4 years ago

@pnrobinson

LIRICAL.java should be changed to target/LIRICAL.jar

pnrobinson commented 4 years ago

fixed this time!