Rework configuration and AnalysisOptions to parameterize the analysis better.
All sample-related options were moved from configuration (LiricalBuilder) to analysis options AnalysisOptions. The APIs are backward compatible to allow transition to the new version, and the code will not break. However, the some functionalities are not present anymore so the analysis will not in fact run without replacing the deprecated LIRICAL methods in the client code with the current methods, and RuntimeExceptions can be expected in the code that previously used to run OK.
Rework configuration and
AnalysisOptionsto parameterize the analysis better.All sample-related options were moved from configuration (
LiricalBuilder) to analysis optionsAnalysisOptions. The APIs are backward compatible to allow transition to the new version, and the code will not break. However, the some functionalities are not present anymore so the analysis will not in fact run without replacing the deprecated LIRICAL methods in the client code with the current methods, andRuntimeExceptions can be expected in the code that previously used to run OK.