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TheJacksonLaboratory / LIRICAL

LIkelihood Ratio Interpretation of Clinical AbnormaLities
https://thejacksonlaboratory.github.io/LIRICAL/stable
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Do not show the candidate disease unless there is a (predicted) pathogenic variant(s) in the associated gene #651

Closed ielis closed 8 months ago

ielis commented 8 months ago

The PR updates the HTML and TSV report generators, to ensure we only report the candidate diseases with predicted pathogenic variant(s) in the associated gene.

This filtering is on by default, and can be turned off by including the --sdwndv flag in the CLI.

ielis commented 8 months ago

@pnrobinson this is the patch to tweak the default behavior such that only the diseases where pathogenic variant(s) are found in the associated gene are included in the HTML and TSV reports.