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TheJacksonLaboratory / MIMIC_HPO

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conditional correlation #3

Open kingmanzhang opened 5 years ago

kingmanzhang commented 5 years ago

Potentially use R to do SQL query, then loop all diagnosis, loop all HPO pairs to calculate conditional correlations. In theory it is possible to do such an exhaustive search, but maybe we should prioritize a bit to save computation time. wiki

kingmanzhang commented 5 years ago

Use Java/Spring to access database, collect summary statistics for lab values to define normal range (if they are not provided), convert to HPO, and then write them back in a separate table. @aeyates

Then use Python/Jupyter notebook to query database and collect summary statistics. @aeyates

Last, perform final analysis with python at JAX. @kingmanzhang