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TheJacksonLaboratory / PDXintegrator

Code for mapping PDX Net data to a common data model
http://pdxintegrator.readthedocs.io/en/latest/
MIT License
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Phenol #18

Closed pnrobinson closed 5 years ago

pnrobinson commented 5 years ago

I have refactored the code to use the latest maven version from maven central, and removed ontolib. The code builds and runs but encounters this error that I do not think is related to the refactor

Exception in thread "main" java.lang.NumberFormatException: For input string: "day at noon"
    at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
    at java.lang.Integer.parseInt(Integer.java:580)
    at java.lang.Integer.<init>(Integer.java:867)
    at org.jax.pdxintegrator.rdf.PdxModel2Rdf.outputFileRDF(PdxModel2Rdf.java:866)
    at org.jax.pdxintegrator.rdf.PdxModel2Rdf.outputPdxModel(PdxModel2Rdf.java:418)
    at org.jax.pdxintegrator.rdf.PdxModel2Rdf.outputRDF(PdxModel2Rdf.java:286)
    at org.jax.pdxintegrator.command.SimulateCommand.outputSimulation(SimulateCommand.java:73)
    at org.jax.pdxintegrator.command.SimulateCommand.execute(SimulateCommand.java:58)
    at org.jax.pdxintegrator.PdxIntegrator.main(PdxIntegrator.java:19)