TheJacksonLaboratory / PDXintegrator

Code for mapping PDX Net data to a common data model
http://pdxintegrator.readthedocs.io/en/latest/
MIT License
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Instance typing / PDX patients, tumors, ... #6

Open adamstanojevic opened 6 years ago

adamstanojevic commented 6 years ago

Hi guys! Keeping in mind RDF data integrator produces in simulate, i.e. for patient PAT-1088:

j.0:pdxmodel_PAT-1088 j.0:pdxmodel_ageBinLowerRange 50 ; j.0:pdxmodel_ageBinUpperRange 54 ; j.0:pdxmodel_consent j.0:pdxmodel_consent_YES ; j.0:pdxmodel_currentTreatmentDrug "Goserelin[DB00014;65807-02-5]" ; j.0:pdxmodel_ethnicity "hispanic or latino" ; j.0:pdxmodel_gender \http://purl.obolibrary.org/obo/NCIT_C20197 ; j.0:pdxmodel_hasDiagnosis \http://purl.obolibrary.org/obo/NCIT_C27767 ; j.0:pdxmodel_hasPdxModel j.0:pdxmodel_PDX-PAT-1088 ; j.0:pdxmodel_hasTumor j.0:pdxmodel_TUMOR-PAT-1088 ; j.0:pdxmodel_patient_id "PAT-1088" .

It would be great to have additional triples in data like:

j.0:pdxmodel_PAT-1088 rdf:type j.0:pdxmodel_Patient . j.0:pdxmodel_TUMOR-PAT-1088 rdf:type j.0:pdxmodel_Tumor .

which could help in categorization and classification of data, and improve ETL and data validation. Thanks, Adam