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TheJacksonLaboratory / diachromatic

Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
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test dataset #109

Closed pnrobinson closed 5 years ago

pnrobinson commented 5 years ago

We should make a test data set (similar to HiCUP) with some randomized data that would demonstrate the use of all of the steps and that we could use for a complete end-to-end tutorial page in the read the docs

hansenp commented 5 years ago

Let's make one test dataset for Hi-C and one for capture Hi-C. I will just select two good datasets from the currently analyzed CTCF depletion (Nora et al. 2015) and promoter capure Hi-C data (Mifsud et al. 2015). From these datasets, I will randomly select 100,000 reads. This is the same number of reads as for the HiCUP test data.

hansenp commented 5 years ago

Test data:

ftp://ftp.jax.org/robinp/Diachromatic/test_dataset/