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TheJacksonLaboratory / diachromatic

Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
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adding highcharts functionality to Truncator output #112

Closed pnrobinson closed 5 years ago

pnrobinson commented 5 years ago

Es funktioniert alles--bitte mergen, falls nichts dagegen spricht. Wir koennen bald die weiteren Abschnitte auf der Seite analog gestalten.

hansenp commented 5 years ago

I checked out the highchart branch, made a pull, re-built Diachromatic and executed the following command:

Diachromatic
summarize
-t
src/test/resources/data/testInteractionCountsMap/results/test_prefix.truncation.stats.txt
-a
src/test/resources/data/testInteractionCountsMap/results/test_prefix.align.stats.txt
-c
src/test/resources/data/testInteractionCountsMap/results/test_prefix.count.stats.txt
-o
test_html_output
-x
test_html_output

The generated HTML contains no charts only a table. I also ran the truncate command but no HTML was generated. What am I doing wrong? Where are the pie and bar chart?

pnrobinson commented 5 years ago

I had to modify the output format of the text file that gets made by truncate, and so you would need to re-run truncate before running summarize...

hansenp commented 5 years ago

I re-ran truncate. Now the table is filled with numbers. image But I cannot find any figures.