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TheJacksonLaboratory / diachromatic

Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
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cleanup #153

Closed pnrobinson closed 2 years ago

pnrobinson commented 4 years ago

Switched command line interface to picocli (https://picocli.info), which is much nicer for users. I also am switching the logger to correct slf implementation, and I cleaned up a few things. No functional changes.

pnrobinson commented 3 years ago

@hansenp -- I think this can be merged now. I checked that picocli is working. There are no changes to the logic.