search

TheJacksonLaboratory / diachromatic

Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
3 stars 1 forks source link

Self ligation threshold #78

Closed hansenp closed 5 years ago

hansenp commented 5 years ago

I implemented the new logic for read pair categorization including the new definition of self-ligation using an extra threshold.

I adjusted, extended and revised the documentation on read the docs.

Furthermore, refactored the code of the classes Aligner and ReadPair.

I verified the new categorization on HiCUP test data...