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TheJacksonLaboratory / diachromatic

Diachromatic is a Java application for preprocessing and quality control of Hi-C and CHi-C data.
https://diachromatic.readthedocs.io/en/latest/
GNU General Public License v3.0
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–sticky-ends option for truncate command should default to true #93

Closed pnrobinson closed 5 years ago

pnrobinson commented 5 years ago

Question: isn't it much more common to fill in the sticky ends in the CHC protocol? This option should default to true, otherwise users could not notice this and get wrong results.

hansenp commented 5 years ago

Yes, this is true. And this is already the default:

          -s, --sticky-ends
            No fill-in of sticky ends was performed.
            Default: false