DGE Screen > GO Enrichment (DGE): Use of uncommon abbreviations

[hansenp]

In the window that opens when you click on "GO Enrichment (DGE)" it says:

I had to think for a moment to figure out that “TFT” stands for “Term for term”. The abbreviation “PCunion” is used for “Parent-Child Union” and the abbreviation “PCintersect” is used for “Parent-Child Intersect”. These are uncommon abbreviations and some users might have an experience similar to mine, especially since these abbreviations are not introduced and the associated methods not explained anywhere.

I would therefore suggest using the full method names. However, the information about the method used is already shown on the DGE screen from which this window is opened, so actually we could omit it here.

[pnrobinson]

I have extended the text to this:

Gene Ontology (GO) overrepresentation analysis was performed using the Term-for-Term (TFT) approach with Bonferroni multiple-testing correction. The negative decadic logarithm of the p-value for enrichment is displayed for GO terms.

Other parts of the window define what DGE is.

Also, let's work on the mkdocs documentation