search

TheLabbingProject / django_mri

A reusable Django app to manage MRI data.
https://django-mri.readthedocs.io/en/latest/
Apache License 2.0
7 stars 5 forks source link

Running dMRIPrep without surface reconstructing #143

Closed GalKepler closed 2 years ago

GalKepler commented 2 years ago

It turns out there's some open issue with smriprep regarding running reesurfer locally. Sadly, I didn't manage to find a solution BUT it doesn't compromise the quality of the diffusion preprocessing. SO - I've change the default setting for running dmriprep on TheBase protocol so it won't perform surface reconstructing, and we're good to go.

codecov[bot] commented 2 years ago

Codecov Report

Merging #143 (03ff72d) into master (e1ee908) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #143   +/-   ##
=======================================
  Coverage   42.05%   42.05%           
=======================================
  Files         189      189           
  Lines        4071     4071           
  Branches      516      516           
=======================================
  Hits         1712     1712           
  Misses       2337     2337           
  Partials       22       22
Impacted Files Coverage Δ
django_mri/analysis/interfaces/dmriprep/utils.py 100.00% <ø> (ø)

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update e1ee908...03ff72d. Read the comment docs.