issue with matio

[sandeepangara]

Hello @TheLegendAli,

While building caffe in DeepLab I am facing the following issue

ubuntu@ip-172-31-21-77:~/workspace/DeepLab-Context2/build$ cmake .. -- Boost version: 1.54.0 -- Found the following Boost libraries: -- system -- thread -- filesystem -- Found gflags (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libgflags.so) -- Found glog (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libglog.so) -- Found PROTOBUF Compiler: /usr/bin/protoc -- Found lmdb (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/liblmdb.so) -- Found LevelDB (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libleveldb.so) -- Found Snappy (include: /usr/include, library: /usr/lib/libsnappy.so) -- CUDA detected: 7.0 -- Found cuDNN: ver. 4.0.7 found (include: /usr/local/cuda-7.0/include, library: /usr/local/cuda-7.0/lib64/libcudnn.so) -- Added CUDA NVCC flags for: sm_30 -- OpenCV found (/usr/local/share/OpenCV) -- Found Atlas (include: /usr/include, library: /usr/lib/libatlas.so) -- NumPy ver. 1.8.2 found (include: /usr/lib/python2.7/dist-packages/numpy/core/include) -- Boost version: 1.54.0 -- Found the following Boost libraries: -- python

-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)

-- *** Caffe Configuration Summary *** -- General: -- Version : 1.0.0-rc3 -- Git : 6abd64d-dirty -- System : Linux -- C++ compiler : /usr/bin/c++ -- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compare -Wno-uninitialized -- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized

-- Build type : Release

-- BUILD_SHARED_LIBS : ON -- BUILD_python : ON -- BUILD_matlab : OFF -- BUILD_docs : ON -- CPU_ONLY : OFF -- USE_OPENCV : ON -- USE_LEVELDB : ON -- USE_LMDB : ON

-- ALLOW_LMDB_NOLOCK : OFF

-- Dependencies: -- BLAS : Yes (Atlas) -- Boost : Yes (ver. 1.54) -- glog : Yes -- gflags : Yes -- protobuf : Yes (ver. 2.5.0) -- lmdb : Yes (ver. 0.9.10) -- LevelDB : Yes (ver. 1.15) -- Snappy : Yes (ver. 1.1.0) -- OpenCV : Yes (ver. 3.1.0)

-- CUDA : Yes (ver. 7.0)

-- NVIDIA CUDA: -- Target GPU(s) : Auto -- GPU arch(s) : sm_30

-- cuDNN : Yes (ver. 4.0.7)

-- Python: -- Interpreter : /usr/bin/python2.7 (ver. 2.7.6) -- Libraries : /usr/lib/x86_64-linux-gnu/libpython2.7.so (ver 2.7.6)

-- NumPy : /usr/lib/python2.7/dist-packages/numpy/core/include (ver 1.8.2)

-- Documentaion: -- Doxygen : No

-- config_file :

-- Install:

-- Install path : /home/ubuntu/workspace/DeepLab-Context2/build/install

-- Configuring done -- Generating done -- Build files have been written to: /home/ubuntu/workspace/DeepLab-Context2/build ubuntu@ip-172-31-21-77:~/workspace/DeepLab-Context2/build$ make -j32 all [ 1%] Running C++/Python protocol buffer compiler on /home/ubuntu/workspace/DeepLab-Context2/src/caffe/proto/caffe.proto Scanning dependencies of target proto [ 1%] Building CXX object src/caffe/CMakeFiles/proto.dir///include/caffe/proto/caffe.pb.cc.o Linking CXX static library ../../lib/libproto.a [ 1%] Built target proto [ 2%] [ 2%] [ 4%] [ 4%] [ 4%] [ 5%] [ 6%] [ 8%] [ 8%] [ 8%] [ 8%] [ 9%] [ 9%] [ 9%] [ 9%] [ 11%] [ 13%] [ 13%] [ 13%] [ 15%] [ 15%] [ 16%] [ 16%] [ 16%] [ 18%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_sgd_solver.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_silence_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_embed_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_batch_reindex_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_softmax_loss_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_log_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_threshold_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_spatial_product_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_sigmoid_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_bnll_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_sigmoid_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_inner_product_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_domain_transform_forward_only_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_absval_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_dropout_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_mvn_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_tanh_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_pooling_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_domain_transform_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_lcn_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_pooling_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_lrn_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_eltwise_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_tile_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_filter_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_deconv_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_power_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_reduction_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_concat_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_im2col_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_hdf5_output_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_relu_layer.cu.o [ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_hdf5_data_layer.cu.o [ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_euclidean_loss_layer.cu.o [ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_tanh_layer.cu.o [ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_sigmoid_cross_entropy_loss_layer.cu.o [ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_bias_layer.cu.o [ 22%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_scale_layer.cu.o [ 22%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_base_data_layer.cu.o [ 23%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_contrastive_loss_layer.cu.o [ 23%] [ 23%] [ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_exp_layer.cu.o [ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_lrn_layer.cu.o [ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_conv_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_elu_layer.cu.o [ 26%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_slice_layer.cu.o [ 26%] [ 27%] [ 27%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_conv_layer.cu.o [ 27%] [ 29%] [ 29%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_split_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_prelu_layer.cu.o [ 30%] [ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_relu_layer.cu.o [ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_softmax_layer.cu.o [ 31%] [ 31%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_batch_norm_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_softmax_layer.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_math_functions.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_im2col.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_interp.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adadelta_solver.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adagrad_solver.cu.o [ 31%] [ 33%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_rmsprop_solver.cu.o [ 33%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_nesterov_solver.cu.o Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adam_solver.cu.o Scanning dependencies of target caffe [ 33%] [ 33%] [ 34%] [ 34%] [ 34%] [ 36%] [ 37%] [ 37%] [ 37%] [ 38%] [ 38%] [ 38%] [ 40%] [ 40%] [ 40%] [ 43%] [ 43%] [ 43%] [ 44%] [ 45%] [ 47%] [ 47%] [ 47%] [ 47%] [ 48%] [ 50%] [ 50%] [ 50%] [ 50%] [ 50%] [ 50%] Building CXX object src/caffe/CMakeFiles/caffe.dir/common.cpp.o [ 50%] Building CXX object src/caffe/CMakeFiles/caffe.dir/net.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layer_factory.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/blob.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/data_transformer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/mat_write_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/data_reader.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/infogain_loss_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/seg_accuracy_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/batch_norm_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/spp_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/window_data_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/elu_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/cudnn_relu_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/bias_channel_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/bnll_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/hdf5_output_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/cudnn_conv_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/base_conv_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/contrastive_loss_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/dummy_data_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/inner_product_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/silence_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/cudnn_pooling_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/multinomial_logistic_loss_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/pooling_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/euclidean_loss_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/tanh_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/mat_read_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/softmax_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/adaptive_bias_channel_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/split_layer.cpp.o [ 50%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/accuracy_layer.cpp.o [ 50%] [ 51%] [ 51%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/hinge_loss_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/mvn_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/reduction_layer.cpp.o [ 51%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/dropout_layer.cpp.o [ 52%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/threshold_layer.cpp.o [ 52%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/scale_layer.cpp.o [ 54%] [ 54%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/cudnn_softmax_layer.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/eltwise_layer.cpp.o [ 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src/caffe/CMakeFiles/caffe.dir/solvers/adadelta_solver.cpp.o Building CXX object src/caffe/CMakeFiles/caffe.dir/solvers/rmsprop_solver.cpp.o Linking CXX shared library ../../lib/libcaffe.so [ 91%] Built target caffe Scanning dependencies of target CMakeCXXCompilerId Scanning dependencies of target caffe.bin Scanning dependencies of target convert_imageset Scanning dependencies of target compute_image_mean Scanning dependencies of target extract_features Scanning dependencies of target device_query Scanning dependencies of target test_net Scanning dependencies of target finetune_net Scanning dependencies of target upgrade_net_proto_binary Scanning dependencies of target convert_mnist_data Scanning dependencies of target upgrade_solver_proto_text Scanning dependencies of target convert_mnist_siamese_data Scanning dependencies of target train_net Scanning dependencies of target classification Scanning dependencies of target net_speed_benchmark Scanning dependencies of target upgrade_net_proto_text Scanning dependencies of target convert_cifar_data Scanning dependencies of target pycaffe [ 91%] [ 91%] Building CXX object tools/CMakeFiles/CMakeCXXCompilerId.dir/CMakeFiles/2.8.12.2/CompilerIdCXX/CMakeCXXCompilerId.cpp.o Building CXX object examples/CMakeFiles/convert_mnist_data.dir/mnist/convert_mnist_data.cpp.o Linking CXX executable CMakeCXXCompilerId [ 93%] [ 93%] [ 94%] [ 94%] [ 94%] [ 94%] Building CXX object tools/CMakeFiles/device_query.dir/device_query.cpp.o Building CXX object tools/CMakeFiles/compute_image_mean.dir/compute_image_mean.cpp.o Building CXX object tools/CMakeFiles/convert_imageset.dir/convert_imageset.cpp.o Building CXX object examples/CMakeFiles/convert_mnist_siamese_data.dir/siamese/convert_mnist_siamese_data.cpp.o Building CXX object examples/CMakeFiles/convert_cifar_data.dir/cifar10/convert_cifar_data.cpp.o [ 95%] [ 95%] Building CXX object tools/CMakeFiles/extract_features.dir/extract_features.cpp.o [ 97%] [ 97%] [ 97%] [ 97%] [ 98%] [ 98%] Building CXX object tools/CMakeFiles/test_net.dir/test_net.cpp.o Building CXX object tools/CMakeFiles/finetune_net.dir/finetune_net.cpp.o Building CXX object tools/CMakeFiles/upgrade_net_proto_binary.dir/upgrade_net_proto_binary.cpp.o Building CXX object tools/CMakeFiles/caffe.bin.dir/caffe.cpp.o Building CXX object tools/CMakeFiles/train_net.dir/train_net.cpp.o Building CXX object tools/CMakeFiles/upgrade_net_proto_text.dir/upgrade_net_proto_text.cpp.o Building CXX object tools/CMakeFiles/net_speed_benchmark.dir/net_speed_benchmark.cpp.o Building CXX object tools/CMakeFiles/upgrade_solver_proto_text.dir/upgrade_solver_proto_text.cpp.o [ 98%] Built target CMakeCXXCompilerId [100%] [100%] Building CXX object examples/CMakeFiles/classification.dir/cpp_classification/classification.cpp.o Building CXX object python/CMakeFiles/pycaffe.dir/caffe/_caffe.cpp.o Linking CXX executable mnist/convert_mnist_data Linking CXX executable device_query [100%] Built target device_query ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [examples/mnist/convert_mnist_data] Error 1 make[1]: * [examples/CMakeFiles/convert_mnist_data.dir/all] Error 2 make[1]: * Waiting for unfinished jobs.... Linking CXX executable siamese/convert_mnist_siamese_data Linking CXX executable cifar10/convert_cifar_data ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [examples/siamese/convert_mnist_siamese_data] Error 1 make[1]: * [examples/CMakeFiles/convert_mnist_siamese_data.dir/all] Error 2 ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [examples/cifar10/convert_cifar_data] Error 1 make[1]: * [examples/CMakeFiles/convert_cifar_data.dir/all] Error 2 Linking CXX executable compute_image_mean ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/compute_image_mean] Error 1 make[1]: * [tools/CMakeFiles/compute_image_mean.dir/all] Error 2 Linking CXX executable convert_imageset ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/convert_imageset] Error 1 make[1]: * [tools/CMakeFiles/convert_imageset.dir/all] Error 2 Linking CXX executable test_net Linking CXX executable train_net Linking CXX executable net_speed_benchmark Linking CXX executable upgrade_net_proto_text [100%] Built target test_net Linking CXX executable upgrade_solver_proto_text [100%] Built target train_net Linking CXX executable finetune_net [100%] Built target net_speed_benchmark Linking CXX executable upgrade_net_proto_binary [100%] Built target finetune_net ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/upgrade_net_proto_text] Error 1 make[1]: * [tools/CMakeFiles/upgrade_net_proto_text.dir/all] Error 2 ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/upgrade_solver_proto_text] Error 1 make[1]: * [tools/CMakeFiles/upgrade_solver_proto_text.dir/all] Error 2 ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/upgrade_net_proto_binary] Error 1 make[1]: * [tools/CMakeFiles/upgrade_net_proto_binary.dir/all] Error 2 Linking CXX executable extract_features ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/extract_features] Error 1 make[1]: * [tools/CMakeFiles/extract_features.dir/all] Error 2 Linking CXX executable cpp_classification/classification ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [examples/cpp_classification/classification] Error 1 make[1]: * [examples/CMakeFiles/classification.dir/all] Error 2 Linking CXX executable caffe ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close' ../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open' collect2: error: ld returned 1 exit status make[2]: * [tools/caffe] Error 1 make[1]: * [tools/CMakeFiles/caffe.bin.dir/all] Error 2 Linking CXX shared library ../lib/_caffe.so Creating symlink /home/ubuntu/workspace/DeepLab-Context2/python/caffe/_caffe.so -> /home/ubuntu/workspace/DeepLab-Context2/build/lib/_caffe.so [100%] Built target pycaffe make: * [all] Error 2 ubuntu@ip-172-31-21-77:~/workspace/DeepLab-Context2/build$

I have installed matio, Could you please help me.

[TheLegendAli]

Not sure what the problem is. Did you trying compiling using regular 'make all' command?

[abidrahmank]

Hello @TheLegendAli , I am also facing the same issue. Can you please tell me which version of matio you used?

[sandeepangara]

Hello @abidrahmank ,

I am able to build after making the following changes 1) Include the following dependencies in CMakeLists.txt

find_package(MATIO REQUIRED) include_directories(${MATIO_INCLUDE_DIR})

2) Include "${MATIO_LIBRARIES}" target_link_libraries in src/caffe/CMakeLists.txt

3) unzip and include the attached file in CMakeScripts directory FindMATIO.cmake.zip

Then build caffe.

[abidrahmank]

Thanks @anssandeep . I didn't get the second point. I am not much familiar with cmake. Can you make it a little more clear?

[sandeepangara]

Hello @abidrahmank,

Include ${MATIO_LIBRARIES} in target_link_libraries as follows

target_link_libraries(caffe proto ${BLAS_LIBRARIES} ${Boost_LIBRARIES} ${GFLAGS_LIBRARIES} ${GLOG_LIBRARIES} ${HDF5_LIBRARIES} ${LEVELDB_LIBS} ${LMDB_LIBRARIES} ${OpenCV_LIBS} ${CMAKE_THREAD_LIBS_INIT} ${MATIO_LIBRARIES} )

[ksnzh]

@anssandeep I had the same problem. Thanks to your help. It works.

[makaspacex]

@anssandeep I had the same problem and it works now. Thanks for your help.

[Benedetta89]

I did what you say and I got this error:

CMake Error at CMakeLists.txt:28 (find_package): By not providing "FindMATIO.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "MATIO", but CMake did not find one.

Could not find a package configuration file provided by "MATIO" with any of the following names:

MATIOConfig.cmake
matio-config.cmake

Add the installation prefix of "MATIO" to CMAKE_PREFIX_PATH or set "MATIO_DIR" to a directory containing one of the above files. If "MATIO" provides a separate development package or SDK, be sure it has been installed.

-- Configuring incomplete, errors occurred! See also "/home/benedetta/Scrivania/caffe/build/CMakeFiles/CMakeOutput.log". See also "/home/benedetta/Scrivania/caffe/build/CMakeFiles/CMakeError.log". Makefile:544: set di istruzioni per l'obiettivo "cmake_check_build_system" non riuscito make: *** [cmake_check_build_system] Errore 1

Where Did I go wrong?

[askerlee]

A more elegant (but equivalent) way to @anssandeep 's method: Append the following to cmake/Dependencies.cmake:

find_package(MATIO REQUIRED)
include_directories(${MATIO_INCLUDE_DIR})
list(APPEND Caffe_LINKER_LIBS ${MATIO_LIBRARIES})

Then put @anssandeep 's FindMATIO.cmake into cmake/Modules/ Done.

[yc67]

Hi, after adding in the above lines "find_package..." and "include_directories...", I'm getting the following error:

I tried to directly paste the lines into my Makefile.config.example, and I tried to type them up, but they all generate the same error. Could you please give me some suggestion? Thanks!!

[askerlee]

hi @yc67 , were you building with cmake? In my environment, Makefile.config is never generated or used.

[yc67]

Thank you! I was changing the wrong file. Now I've added "find_package..." and "include_dir..." and "list..." to cmake/dependencies.cmake, and I added the findmatio.cmake file to cmake/Modules/, but I'm still getting the following error:

Should I specify a path to MATIO somewhere? Thanks!

[askerlee]

@yc67 have you installed libmatio-dev?

[yc67]

Thank you! Problem solved.

[alimurreza]

@anssandeep thanks. your solution works for the installation. @Benedetta89 Just follow what @anssandeep said. There is a subtle thing you might have missed. You have do the the changes in 2 different CMakeLists.txt

change 1:

Open the CMakeLists.txt in the directory where you have the Makefile.config and add these two lines find_package(MATIO REQUIRED) include_directories(${MATIO_INCLUDE_DIR})

change 2:

Open the CMakeLists.txt inside the src/caffe directory (This is a different one) now at the end of the target_link_libraries() add the ${MATIO_LIBRARIES} as follows:

target_link_libraries(caffe proto ${BLAS_LIBRARIES} ... ${CMAKE_THREAD_LIBS_INIT} ${MATIO_LIBRARIES})

now do the build procedure using cmake .. make all

It should work.

[feipanir]

Same problem while building with cmake, thanks very much!

[ygjwd12345]

@alimurreza I use cmake to make deeplabv2 ,but I can't find caffe.bin. Can you tell how to find it?