TheSEED / RASTtk-Distribution

KBase distribution module for RASTtk.
http://www.nature.com/articles/srep08365
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perl memory limit! #1

Open scottdaniel opened 7 years ago

scottdaniel commented 7 years ago

Hi,

Can you recompile the version of perl in the MAC dmg to include 64-bit support? I'm trying to:

rast-call-features-CDS-prodigal

on a ~220MB GTO file with about 300K contigs and get the error: perl(16828,0xa50c11c0) malloc: mach_vm_map(size=393281536) failed (error code=3) error: can't allocate region * set a breakpoint in malloc_error_break to debug Out of memory!

It looks like it's erroring out near the 4gb mark

It looks like perl is only 32-bit (if I run perl -V it shows)