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TheSEED / RASTtk-Distribution

KBase distribution module for RASTtk.
http://www.nature.com/articles/srep08365
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can no long connect to server through command line #15

Closed wufabai closed 4 years ago

wufabai commented 4 years ago

I have used the RASTtk 1.3.0 for a while on my Mac until a few months ago, but now it seems to have difficulty connecting to the server and gave the following problem. I uninstalled, re-download, and reinstalled it, but the issue remained. Could you take a look? Thanks!

$ rast-call-features-repeat-region-SEED < FWG001_repeats.gto > FW001_repeats.gto2

Error invoking method call_features_repeat_region_SEED HTTP status: 301 Moved Permanently Function invoked: call_features_repeat_region_SEED

Trace begun at /Applications/RASTtk.app/deployment/lib/Bio/KBase/GenomeAnnotation/Client.pm line 10370 Bio::KBase::GenomeAnnotation::Client::call_features_repeat_region_SEED('Bio::KBase::GenomeAnnotation::Client=HASH(0x7bd3dca0)', 'HASH(0x7b3f8750)', 'HASH(0x7b3f46f0)') called at /Applications/RASTtk.app/deployment/plbin/rast-call-features-repeat-region-SEED.pl line 46

wufabai commented 4 years ago

The issue has been solved through Email contact by Gordon. I did not know that the use of RASTtk package itself has been discontinued. I downloaded the PATRIC https://github.com/PATRIC3/PATRIC-distribution as instructed here and it worked fine with the same command lines as in RASTtk. Thank you!