how to create model - Githubissues

TheSEED / RASTtk-Distribution

KBase distribution module for RASTtk.

http://www.nature.com/articles/srep08365

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how to create model #5

Open jotech opened 7 years ago

jotech commented 7 years ago

I'm wondering how I could create a metabolic model for an annotated genome?

rast-create-genome --scientific-name "Ochrobactrum sp." --genetic-code 11 --domain Bacteria --contigs /home/jo/rast/MYb71.fasta > out.gto
rast-process-genome < out.gto > out.gto2
fba-buildfbamodel out.gto2

Model generation failed!

How could I get this work?

olsonanl commented 7 years ago

I'm checking with the modeling folks. I'm not sure if the model servers that this distribution point at are operational or not.

jotech commented 7 years ago

Just come back to it. Thanks for checking!