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TheSatoLab / Merbecovirus_recombination

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could I know how to get the `system.file("{recombination-free}.nwk", package = "treeio")` and `system.file("{RBD}.nwk", package = "treeio")` file? #2

Closed liamxg closed 6 months ago

liamxg commented 6 months ago

Dear @JetVirology22,

Your project is great, I like it, could you please tell me how to get the system.file("{recombination-free}.nwk", package = "treeio") and system.file("{RBD}.nwk", package = "treeio") file? thanks.

JetVirology22 commented 6 months ago

Hello @liamxg,

Thank you for the message. Regarding the nwk files, you have to do first the phylogenetic analysis, then convert your tree file into newick format. In this particular script, you can use any tree format like nexus, etc. After getting the tree file, you can perform that particular script, then read the tree and so on. I used R in this analysis.

Hope this helps!

Jarel

liamxg commented 6 months ago

Dear @JetVirology22, you are so nice!

I will work through on this, thanks.