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TheochemUI / eOn

eOn v3 and beyond
https://theochemui.github.io/eOn/
BSD 3-Clause "New" or "Revised" License
2 stars 2 forks source link

Installation with arm64 #111

Open AlanSong641 opened 2 months ago

AlanSong641 commented 2 months ago

so I am trying to install eongit master branch in Mac with m1 chip. 

The Meson build system
Version: 1.4.1
Source dir: /Users/alan/Github/EONgit-main/client
Build dir: /Users/alan/Github/EONgit-main/client/bbdir
Build type: native build
Project name: eonclient
Project version: 0.1
C++ compiler for the host machine: arm64-apple-darwin20.0.0-clang++ (clang 16.0.6 "clang version 16.0.6")
C++ linker for the host machine: arm64-apple-darwin20.0.0-clang++ ld64 711
Host machine cpu family: aarch64
Host machine cpu: aarch64
C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
Library m found: YES
Run-time dependency threads found: YES
Found CMake: /Users/alan/micromamba/envs/eongit/bin/cmake (3.29.6)
Run-time dependency eigen3 (modules: Eigen3::Eigen) found: YES 3.4.0
Found pkg-config: YES (/Users/alan/micromamba/envs/eongit/bin/pkg-config) 0.29.2
Run-time dependency fmt found: YES 9.1.0
Run-time dependency spdlog found: YES 1.12.0
Program python3 found: YES (/Users/alan/micromamba/envs/eongit/bin/python3.12)
Run-time dependency python found: YES 3.12
pybind11-config found: NO
Run-time dependency pybind11 found: YES 2.12.0
Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711

Executing subproject xtb 

xtb| Project name: xtb
xtb| Project version: 6.6.1
xtb| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
xtb| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
xtb| C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
xtb| C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
xtb| Program git found: YES (/opt/homebrew/bin/git)
xtb| WARNING: You should add the boolean check kwarg to the run_command call.
xtb| It currently defaults to false,
xtb| but it will default to true in future releases of meson.
xtb| See also: https://github.com/mesonbuild/meson/issues/9300
xtb| Program python3 found: YES (/Users/alan/micromamba/envs/eongit/bin/python3)
xtb| Configuring xtb_version.fh using configuration
xtb| subprojects/xtb/meson/meson.build:23: WARNING: FC and CC are not from the same vendor
xtb| Run-time dependency lapack found: YES
xtb| Run-time dependency blas found: YES
xtb| Run-time dependency OpenMP found: YES 5.0
xtb| Dependency threads found: YES unknown (cached)
xtb| Run-time dependency mctc-lib found: NO (tried pkgconfig, framework and cmake)
xtb| Looking for a fallback subproject for the dependency mctc-lib
xtb| Using subprojects/xtb/subprojects/mctc-lib.wrap
xtb| WARNING: Subproject mctc-lib's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:mctc-lib

mctc-lib| Project name: mctc-lib
mctc-lib| Project version: 0.3.1
mctc-lib| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
mctc-lib| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
mctc-lib| Run-time dependency json-fortran found: NO (tried pkgconfig, framework and cmake)
mctc-lib| Looking for a fallback subproject for the dependency json-fortran
mctc-lib| Building fallback subproject with default_library=static
mctc-lib| Using subprojects/mctc-lib/subprojects/json-fortran-8.2.5.wrap
mctc-lib| WARNING: Subproject json-fortran-8.2.5's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:mctc-lib:json-fortran-8.2.5

json-fortran-8.2.5| Project name: jsonfortran
json-fortran-8.2.5| Project version: 8.2.5
json-fortran-8.2.5| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
json-fortran-8.2.5| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
json-fortran-8.2.5| Build targets in project: 12
json-fortran-8.2.5| Subproject json-fortran-8.2.5 finished.

mctc-lib| Dependency json-fortran from subproject subprojects/json-fortran-8.2.5 found: YES 8.2.5
mctc-lib| Build targets in project: 15
mctc-lib| Subproject mctc-lib finished.

xtb| Dependency mctc-lib from subproject subprojects/mctc-lib found: YES 0.3.1
xtb| Run-time dependency tblite found: NO (tried pkgconfig, framework and cmake)
xtb| Looking for a fallback subproject for the dependency tblite
xtb| Using subprojects/xtb/subprojects/tblite.wrap
xtb| WARNING: Subproject tblite's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite

tblite| Project name: tblite
tblite| Project version: 0.3.0
tblite| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
tblite| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
tblite| C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
tblite| C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
tblite| Dependency openmp found: YES 5.0 (cached)
tblite| Dependency lapack found: YES unknown (cached)
tblite| Dependency blas found: YES unknown (cached)
tblite| Dependency mctc-lib found: YES 0.3.1 (cached)
tblite| Run-time dependency dftd4 found: NO (tried pkgconfig, framework and cmake)
tblite| Looking for a fallback subproject for the dependency dftd4
tblite| Using subprojects/xtb/subprojects/dftd4.wrap
tblite| WARNING: Subproject dftd4's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:dftd4

dftd4| Project name: dftd4
dftd4| Project version: 3.5.0
dftd4| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
dftd4| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
dftd4| C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
dftd4| C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
dftd4| Dependency openmp found: YES 5.0 (cached)
dftd4| Dependency lapack found: YES unknown (cached)
dftd4| Library blas found: YES
dftd4| Dependency mctc-lib found: YES 0.3.1 (cached)
dftd4| Run-time dependency multicharge found: NO (tried pkgconfig, framework and cmake)
dftd4| Looking for a fallback subproject for the dependency multicharge
dftd4| Using subprojects/xtb/subprojects/multicharge.wrap
dftd4| WARNING: Subproject multicharge's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:dftd4:multicharge

multicharge| Project name: multicharge
multicharge| Project version: 0.2.0
multicharge| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
multicharge| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
multicharge| Dependency openmp found: YES 5.0 (cached)
multicharge| Dependency lapack found: YES unknown (cached)
multicharge| Dependency blas found: YES unknown (cached)
multicharge| Dependency mctc-lib found: YES 0.3.1 (cached)
multicharge| Using subprojects/xtb/subprojects/mstore.wrap
multicharge| WARNING: Subproject mstore's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:dftd4:multicharge:mstore

mstore| Project name: mstore
mstore| Project version: 0.2.0
mstore| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
mstore| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
mstore| Dependency mctc-lib found: YES 0.3.1 (cached)
mstore| Build targets in project: 20
mstore| Subproject mstore finished.

multicharge| Build targets in project: 21
multicharge| Subproject multicharge finished.

dftd4| Dependency multicharge from subproject subprojects/multicharge found: YES 0.2.0
dftd4| Program tester.py found: YES (/Users/alan/Github/EONgit-main/client/subprojects/dftd4/app/tester.py)
dftd4| Dependency mstore from subproject subprojects/mstore found: YES 0.2.0
dftd4| Build targets in project: 24
dftd4| Subproject dftd4 finished.

tblite| Dependency dftd4 from subproject subprojects/dftd4 found: YES 3.5.0
tblite| Run-time dependency s-dftd3 found: NO (tried pkgconfig, framework and cmake)
tblite| Looking for a fallback subproject for the dependency s-dftd3
tblite| Using subprojects/xtb/subprojects/s-dftd3.wrap
tblite| WARNING: Subproject s-dftd3's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:s-dftd3

s-dftd3| Project name: s-dftd3
s-dftd3| Project version: 1.0.0
s-dftd3| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
s-dftd3| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
s-dftd3| subprojects/s-dftd3/meson.build:30: WARNING: add_languages is missing native:, assuming languages are wanted for both host and build.
s-dftd3| C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
s-dftd3| C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
s-dftd3| Run-time dependency OpenMP found: YES 5.0
s-dftd3| Dependency mctc-lib found: YES 0.3.1 (cached)
s-dftd3| Run-time dependency toml-f found: NO (tried pkgconfig, framework and cmake)
s-dftd3| Looking for a fallback subproject for the dependency toml-f
s-dftd3| Using subprojects/xtb/subprojects/toml-f.wrap
s-dftd3| WARNING: Subproject toml-f's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:s-dftd3:toml-f

toml-f| Project name: toml-f
toml-f| Project version: 0.4.1
toml-f| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
toml-f| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
toml-f| Run-time dependency test-drive found: NO (tried pkgconfig, framework and cmake)
toml-f| Looking for a fallback subproject for the dependency test-drive
toml-f| Building fallback subproject with default_library=static
toml-f| Using subprojects/xtb/subprojects/test-drive.wrap
toml-f| WARNING: Subproject test-drive's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:tblite:s-dftd3:toml-f:test-drive

test-drive| Project name: test-drive
test-drive| Project version: 0.4.0
test-drive| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
test-drive| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
test-drive| Build targets in project: 29
test-drive| Subproject test-drive finished.

toml-f| Dependency test-drive from subproject subprojects/test-drive found: YES 0.4.0
toml-f| Program go found: NO
toml-f| Build targets in project: 33
toml-f| Subproject toml-f finished.

s-dftd3| Dependency toml-f from subproject subprojects/toml-f found: YES 0.4.1
s-dftd3| Dependency mstore found: YES 0.2.0 (cached)
s-dftd3| Program /Users/alan/Github/EONgit-main/client/subprojects/s-dftd3/test/validation/tester.py found: YES (/Users/alan/micromamba/envs/eongit/bin/python3.12 /Users/alan/Github/EONgit-main/client/subprojects/s-dftd3/test/validation/tester.py)
s-dftd3| Build targets in project: 36
s-dftd3| Subproject s-dftd3 finished.

tblite| Dependency s-dftd3 from subproject subprojects/s-dftd3 found: YES 1.0.0
tblite| Dependency toml-f found: YES 0.4.1 (cached)
tblite| Dependency mstore found: YES 0.2.0 (cached)
tblite| Program tester.py found: YES (/Users/alan/micromamba/envs/eongit/bin/python3.12 /Users/alan/Github/EONgit-main/client/subprojects/tblite/test/validation/tester.py)
tblite| Build targets in project: 39
tblite| Subproject tblite finished.

xtb| Dependency tblite from subproject subprojects/tblite found: YES 0.3.0
xtb| Run-time dependency cpx found: NO (tried pkgconfig, framework and cmake)
xtb| Looking for a fallback subproject for the dependency cpx
xtb| Using subprojects/xtb/subprojects/cpx.wrap
xtb| WARNING: Subproject cpx's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:cpx

cpx| Project name: cpx
cpx| Project version: 1.0.0
cpx| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
cpx| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
cpx| C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
cpx| C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
cpx| Dependency openmp found: YES 5.0 (cached)
cpx| Dependency lapack found: YES unknown (cached)
cpx| Dependency blas found: YES unknown (cached)
cpx| Run-time dependency numsa found: NO (tried pkgconfig, framework and cmake)
cpx| Looking for a fallback subproject for the dependency numsa
cpx| Using subprojects/xtb/subprojects/numsa.wrap
cpx| WARNING: Subproject numsa's revision may be out of date; its wrap file has changed since it was first configured

Executing subproject xtb:cpx:numsa

numsa| Project name: numsa
numsa| Project version: 0.2.0
numsa| Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
numsa| Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
numsa| Dependency openmp found: YES 5.0 (cached)
numsa| Build targets in project: 42
numsa| Subproject numsa finished.

cpx| Dependency numsa from subproject subprojects/numsa found: YES 0.2.0
cpx| Program config/install-mod.py found: YES (/usr/bin/env python /Users/alan/Github/EONgit-main/client/subprojects/cpx/config/install-mod.py)
cpx| Dependency test-drive from subproject subprojects/test-drive found: YES 0.4.0
cpx| Build targets in project: 46
cpx| Subproject cpx finished.

xtb| Dependency cpx from subproject subprojects/cpx found: YES 1.0.0
xtb| Program asciidoctor found: NO
xtb| Dependency test-drive found: YES 0.4.0 (cached)
xtb| Build targets in project: 51
xtb| Subproject xtb finished.

Program python3 found: YES (/Users/alan/micromamba/envs/eongit/bin/python3.12)
Dependency pybind11 found: YES 2.12.0 (cached)
Run-time dependency GTest found: YES 1.14.0
Run-time dependency GMock found: YES 1.14.0
Build targets in project: 60

eonclient 0.1

  Subprojects
    cpx               : YES 1 warnings (from xtb)
    dftd4             : YES 1 warnings (from xtb => tblite)
    json-fortran-8.2.5: YES (from xtb => mctc-lib)
    mctc-lib          : YES 1 warnings (from xtb)
    mstore            : YES (from xtb => tblite => dftd4 => multicharge)
    multicharge       : YES 1 warnings (from xtb => tblite => dftd4)
    numsa             : YES (from xtb => cpx)
    s-dftd3           : YES 2 warnings (from xtb => tblite)
    tblite            : YES 2 warnings (from xtb)
    test-drive        : YES (from xtb => tblite => s-dftd3 => toml-f)
    toml-f            : YES 1 warnings (from xtb => tblite => s-dftd3)
    xtb               : YES 8 warnings

  User defined options
    prefix            : /Users/alan/micromamba/envs/eongit

Found ninja-1.12.1 at /Users/alan/micromamba/envs/eongit/bin/ninja
In file included from ../potentials/ASE_ORCA/ASE_ORCA.cpp:11:
In file included from ../potentials/ASE_ORCA/ASE_ORCA.h:14:
../potentials/ASE_ORCA/../../Potential.h:21:9: warning: field 'forceCallCounter' will be initialized after field 'm_params' [-Wreorder-ctor]
        forceCallCounter{0},
        ^~~~~~~~~~~~~~~~~~~
        m_params{a_params}
In file included from ../potentials/ASE_ORCA/ASE_ORCA.cpp:11:
In file included from ../potentials/ASE_ORCA/ASE_ORCA.h:16:
In file included from /opt/homebrew/include/pybind11/eigen.h:12:
In file included from /opt/homebrew/include/pybind11/eigen/matrix.h:28:
In file included from /Users/alan/micromamba/envs/eongit/include/eigen3/Eigen/SparseCore:61:
/Users/alan/micromamba/envs/eongit/include/eigen3/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
../potentials/ASE_ORCA/ASE_ORCA.cpp:48:54: warning: parameter 'variance' set but not used [-Wunused-but-set-parameter]
                       double *F, double *U, double *variance,
                                                     ^
3 warnings generated.
ninja: build stopped: subcommand failed.
Could not rebuild /Users/alan/Github/EONgit-main/client/bbdir
AlanSong641 commented 2 months ago

something is up with ASE_ORCA potential? and where do I choose which potential we need to compile since we are not using makefile anymore.

HaoZeke commented 2 months ago

@AlanSong641 could provide the commit? main shouldn't be trying to use the xtb and stuff (it is false on main), the meson_options.txt file can be used or by the command line:

# if you don't want to remove the directory / else run with setup
meson configure b2dir -Dwith_xtb=False
meson compile -C b2dir
HaoZeke commented 2 months ago

Also there were a couple of other fixes / better build defaults which landed this evening :)

AlanSong641 commented 2 months ago

alright, updated the newest master branch. here is a new dependency error which require Catch2, I assume that this will cmake for me automatically, but it failed somehow.

The Meson build system
Version: 1.4.1
Source dir: /Users/alan/Github/EONgit-main/client
Build dir: /Users/alan/Github/EONgit-main/client/bbdir
Build type: native build
Project name: eonclient
Project version: 0.1
C++ compiler for the host machine: arm64-apple-darwin20.0.0-clang++ (clang 16.0.6 "clang version 16.0.6")
C++ linker for the host machine: arm64-apple-darwin20.0.0-clang++ ld64 711
Host machine cpu family: aarch64
Host machine cpu: aarch64
C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 16.0.6 "clang version 16.0.6")
C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 711
Library m found: YES
Run-time dependency threads found: YES
Found CMake: /Users/alan/micromamba/envs/eongit/bin/cmake (3.29.6)
Run-time dependency eigen3 (modules: Eigen3::Eigen) found: YES 3.4.0
Found pkg-config: YES (/Users/alan/micromamba/envs/eongit/bin/pkg-config) 0.29.2
Run-time dependency fmt found: YES 9.1.0
Run-time dependency spdlog found: YES 1.12.0
Fortran compiler for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran (gcc 12.3.0 "GNU Fortran (GCC) 12.3.0")
Fortran linker for the host machine: /Users/alan/micromamba/envs/eongit/bin/arm64-apple-darwin20.0.0-gfortran ld64 711
Run-time dependency catch2 found: NO (tried cmake)

meson.build:354:17: ERROR: Dependency "Catch2" not found, tried cmake
HaoZeke commented 2 months ago

Ah, so Catch2 is now part of the environment.yml but it wouldn't have been installed unless the environment is re-created, locally micromamba install catch2 will work

AlanSong641 commented 2 months ago

okay now we close to success, maybe need to modify few more libs to compatible with arm64

[134/144] Compiling C++ object eonclient.p/ClientEON.cpp.o
FAILED: eonclient.p/ClientEON.cpp.o 
arm64-apple-darwin20.0.0-clang++ -Ieonclient.p -I. -I.. -I../thirdparty -I/Users/alan/micromamba/envs/eongit/include/eigen3 -I/Users/alan/micromamba/envs/eongit/include -fdiagnostics-color=always -D_LIBCPP_ENABLE_ASSERTIONS=1 -Wall -Winvalid-pch -Wextra -std=c++17 -O0 -g -faligned-allocation -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/alan/micromamba/envs/eongit/include -D_FORTIFY_SOURCE=2 -isystem /Users/alan/micromamba/envs/eongit/include -DSPDLOG_SHARED_LIB -DSPDLOG_COMPILED_LIB -Wno-unused-result -g3 -O0 -Wunused-but-set-parameter -DOSX=TRUE -DSPDLOG_FMT_EXTERNAL -DCUH2_POT -DWITH_FORTRAN -MD -MQ eonclient.p/ClientEON.cpp.o -MF eonclient.p/ClientEON.cpp.o.d -o eonclient.p/ClientEON.cpp.o -c ../ClientEON.cpp
In file included from ../ClientEON.cpp:40:
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/xmmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
 ^
In file included from ../ClientEON.cpp:40:
In file included from /Users/alan/micromamba/envs/eongit/lib/clang/16/include/xmmintrin.h:17:
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
 ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:37:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/Users/alan/micromamba/envs/eongit/bin/../include/c++/v1/math.h:507:10: note: '__builtin_isless' declared here
  return __builtin_isless((type)__x, (type)__y);
         ^
In file included from ../ClientEON.cpp:40:
In file included from /Users/alan/micromamba/envs/eongit/lib/clang/16/include/xmmintrin.h:17:
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:37:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
    ~~~~~~~~~~~~~~~~~~~~^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:54:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:71:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:133:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:163:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:193:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:220:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:243:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:264:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:291:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:314:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:335:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:356:19: error: use of undeclared identifier '__builtin_ia32_paddb'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:356:19: note: '__builtin_arm_addg' declared here
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:356:19: error: first argument of MTE builtin function must be a pointer ('__v8qi' (vector of 8 'char' values) invalid)
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^                    ~~~~~~~~~~~~
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:377:19: error: use of undeclared identifier '__builtin_ia32_paddw'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:356:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Users/alan/micromamba/envs/eongit/lib/clang/16/include/mmintrin.h:377:19: error: first argument of MTE builtin function must be a pointer ('__v4hi' (vector of 4 'short' values) invalid)
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^                    ~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[139/144] Compiling C++ object eonclient.p/CommandLine.cpp.o
ninja: build stopped: subcommand failed.
Could not rebuild /Users/alan/Github/EONgit-main/client/bbdir
HaoZeke commented 2 months ago

Yeah we're almost there, it seems there is an old ifdef for OSX which isn't valid for aarm64, I'll update ASAP

AlanSong641 commented 2 months ago

thanks for the update, pulled the new main branch and overwrited the micromamba environment. unfortunately now we have new error:

[140/156] Compiling C++ object eonclient.p/ClientEON.cpp.o
FAILED: eonclient.p/ClientEON.cpp.o 
arm64-apple-darwin20.0.0-clang++ -Ieonclient.p -I. -I.. -I../thirdparty -I/Users/alan/micromamba/envs/eongit/include/eigen3 -I/Users/alan/micromamba/envs/eongit/include -fdiagnostics-color=always -D_LIBCPP_ENABLE_ASSERTIONS=1 -std=c++17 -O0 -g -faligned-allocation -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/alan/micromamba/envs/eongit/include -D_FORTIFY_SOURCE=2 -isystem /Users/alan/micromamba/envs/eongit/include -DSPDLOG_SHARED_LIB -DSPDLOG_COMPILED_LIB -Wno-class-memaccess -Wno-unused-function -Wno-reorder -Wno-sign-compare -Wno-unused-but-set-parameter -Wno-unused-but-set-variable -Wno-unused-parameter -Wno-unused-result -Wno-unused-variable -g3 -O0 -DEON_CHECKS=TRUE -DOSX=TRUE -DSPDLOG_FMT_EXTERNAL -DCUH2_POT -DWITH_FORTRAN -MD -MQ eonclient.p/ClientEON.cpp.o -MF eonclient.p/ClientEON.cpp.o.d -o eonclient.p/ClientEON.cpp.o -c ../ClientEON.cpp
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
../ClientEON.cpp:50:26: error: use of undeclared identifier 'OS_INFO'
  spdlog::info("OS: {}", OS_INFO);
                         ^
../ClientEON.cpp:51:28: error: use of undeclared identifier 'ARCH'
  spdlog::info("Arch: {}", ARCH);
                           ^
../ClientEON.cpp:410:26: error: variable has incomplete type 'struct task_basic_info'
  struct task_basic_info t_info;
                         ^
../ClientEON.cpp:410:10: note: forward declaration of 'task_basic_info'
  struct task_basic_info t_info;
         ^
../ClientEON.cpp:411:3: error: unknown type name 'mach_msg_type_number_t'
  mach_msg_type_number_t t_info_count = TASK_BASIC_INFO_COUNT;
  ^
../ClientEON.cpp:411:41: error: use of undeclared identifier 'TASK_BASIC_INFO_COUNT'
  mach_msg_type_number_t t_info_count = TASK_BASIC_INFO_COUNT;
                                        ^
../ClientEON.cpp:413:7: error: use of undeclared identifier 'KERN_SUCCESS'
  if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO,
      ^
../ClientEON.cpp:413:33: error: use of undeclared identifier 'mach_task_self'
  if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO,
                                ^
../ClientEON.cpp:414:34: error: use of undeclared identifier 'task_info_t'
                                (task_info_t)&t_info, &t_info_count)) {
                                 ^
../ClientEON.cpp:413:51: error: use of undeclared identifier 'TASK_BASIC_INFO'
  if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO,
                                                  ^
1 warning and 9 errors generated.
[141/156] Compiling C++ object test_matter.p/gtests_MatterTest.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[142/156] Compiling C++ object approve_params.p/gtests_ApproveParams.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[143/156] Compiling C++ object test_pot.p/gtests_PotTest.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[144/156] Compiling C++ object eonclient.p/CommandLine.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[145/156] Compiling C++ object libTestMain.dylib.p/gtests_TestMain.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[146/156] Compiling C++ object libTestMain.dylib.p/thirdparty_catch2_catch_amalgamated.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[147/156] Compiling C++ object test_matter.p/thirdparty_catch2_catch_amalgamated.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[148/156] Compiling C++ object test_pot.p/thirdparty_catch2_catch_amalgamated.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
[149/156] Compiling C++ object approve_params.p/thirdparty_catch2_catch_amalgamated.cpp.o
warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option]
1 warning generated.
ninja: build stopped: subcommand failed.
Could not rebuild /Users/alan/Github/EONgit/client/bbdir
HaoZeke commented 2 months ago

Ah my bad, this was due to a missing file I pushed a while ago, can you check with this commit? git checkout 75506b78

Also a good idea to wipe the build directory (it will then re-create version.h with the right details) --- Rohit

On 6/21/24 4:30 AM, Alan @.***> wrote:

thanks for the update, pulled the new main branch and overwrited the micromamba environment. unfortunately now we have new error:

|[140/156] Compiling C++ object eonclient.p/ClientEON.cpp.o FAILED: eonclient.p/ClientEON.cpp.o arm64-apple-darwin20.0.0-clang++ -Ieonclient.p -I. -I.. -I../thirdparty -I/Users/alan/micromamba/envs/eongit/include/eigen3 -I/Users/alan/micromamba/envs/eongit/include -fdiagnostics-color=always -D_LIBCPP_ENABLE_ASSERTIONS=1 -std=c++17 -O0 -g -faligned-allocation -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/alan/micromamba/envs/eongit/include -D_FORTIFY_SOURCE=2 -isystem /Users/alan/micromamba/envs/eongit/include -DSPDLOG_SHARED_LIB -DSPDLOG_COMPILED_LIB -Wno-class-memaccess -Wno-unused-function -Wno-reorder -Wno-sign-compare -Wno-unused-but-set-parameter -Wno-unused-but-set-variable -Wno-unused-parameter -Wno-unused-result -Wno-unused-variable -g3 -O0 -DEON_CHECKS=TRUE -DOSX=TRUE -DSPDLOG_FMT_EXTERNAL -DCUH2_POT -DWITH_FORTRAN -MD -MQ eonclient.p/ClientEON.cpp.o -MF eonclient.p/ClientEON.cpp.o.d -o eonclient.p/ClientEON.cpp.o -c ../ClientEON.cpp warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] ../ClientEON.cpp:50:26: error: use of undeclared identifier 'OS_INFO' spdlog::info("OS: {}", OS_INFO); ^ ../ClientEON.cpp:51:28: error: use of undeclared identifier 'ARCH' spdlog::info("Arch: {}", ARCH); ^ ../ClientEON.cpp:410:26: error: variable has incomplete type 'struct task_basic_info' struct task_basic_info t_info; ^ ../ClientEON.cpp:410:10: note: forward declaration of 'task_basic_info' struct task_basic_info t_info; ^ ../ClientEON.cpp:411:3: error: unknown type name 'mach_msg_type_number_t' mach_msg_type_number_t t_info_count = TASK_BASIC_INFO_COUNT; ^ ../ClientEON.cpp:411:41: error: use of undeclared identifier 'TASK_BASIC_INFO_COUNT' mach_msg_type_number_t t_info_count = TASK_BASIC_INFO_COUNT; ^ ../ClientEON.cpp:413:7: error: use of undeclared identifier 'KERN_SUCCESS' if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO, ^ ../ClientEON.cpp:413:33: error: use of undeclared identifier 'mach_task_self' if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO, ^ ../ClientEON.cpp:414:34: error: use of undeclared identifier 'task_info_t' (task_info_t)&t_info, &t_info_count)) { ^ ../ClientEON.cpp:413:51: error: use of undeclared identifier 'TASK_BASIC_INFO' if (KERN_SUCCESS != task_info(mach_task_self(), TASK_BASIC_INFO, ^ 1 warning and 9 errors generated. [141/156] Compiling C++ object test_matter.p/gtests_MatterTest.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [142/156] Compiling C++ object approve_params.p/gtests_ApproveParams.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [143/156] Compiling C++ object test_pot.p/gtests_PotTest.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [144/156] Compiling C++ object eonclient.p/CommandLine.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [145/156] Compiling C++ object libTestMain.dylib.p/gtests_TestMain.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [146/156] Compiling C++ object libTestMain.dylib.p/thirdparty_catch2_catch_amalgamated.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [147/156] Compiling C++ object test_matter.p/thirdparty_catch2_catch_amalgamated.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [148/156] Compiling C++ object test_pot.p/thirdparty_catch2_catch_amalgamated.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. [149/156] Compiling C++ object approve_params.p/thirdparty_catch2_catch_amalgamated.cpp.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] 1 warning generated. ninja: build stopped: subcommand failed. Could not rebuild /Users/alan/Github/EONgit/client/bbdir |

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AlanSong641 commented 2 months ago

hmmmm tried checkout to that branch and get the same error:(

HaoZeke commented 2 months ago

Ah, we can debug it live when we meet, but if it is causing trouble they're only logging statements, could ifdef them out for now on __arm__

HaoZeke commented 2 months ago

The issue is that OS and friends are not being set in the version.h file on M1 arch.. so

configure_file(
  input: 'version.h.in',
  output: 'version.h',
  configuration: {
    'VERSION': version,
    'BUILD_DATE': build_date,
    'OS_INFO': host_system,
    'ARCH': architecture,
  }
)

Where the last 2 are supposed to be set from meson and ... aren't

HaoZeke commented 2 months ago

So the problem is "fixed" via ifdef skips, but really meson should do a better job, so I'll keep this open for a bit.