I have attempted to install sjSDM to run on my NVIDIA GPU (NVIDIA T400 4GB). When I run the toy example in the introductory vignette, it runs properly, but uses the CPU instead of the GPU, even though I believed that I installede it for use with the GPU. When I force the sjSDM() function to use the GPU using the device = "gpu", I get the following error:
Error in py_call_impl(callable, call_args$unnamed, call_args$named) : AssertionError: Torch not compiled with CUDA enabled.
I tried to install sjSDM several times, based on some of the advice you provided to others with installation issues. Here is the code I used:
NOTE: Python version was forced by use_python() function
active environment : C:/Users/rdel1ess/AppData/Local/anaconda3
active env location : C:/Users/rdel1ess/AppData/Local/anaconda3
user config file : C:\Users\rdel1ess\.condarc
Hello, many thanks for creating this package.
I have attempted to install sjSDM to run on my NVIDIA GPU (NVIDIA T400 4GB). When I run the toy example in the introductory vignette, it runs properly, but uses the CPU instead of the GPU, even though I believed that I installede it for use with the GPU. When I force the sjSDM() function to use the GPU using the
device = "gpu", I get the following error:I tried to install sjSDM several times, based on some of the advice you provided to others with installation issues. Here is the code I used:
devtools::install_github("https://github.com/TheoreticalEcology/s-jSDM", subdir = "sjSDM", ref = "master")reticulate::conda_remove("r-sjSDM")reticulate::conda_create(envname = "r-sjsdm", python_version = "3.11")reticulate::conda_install(envname = "r-sjsdm", packages =c("pytorch", "torchvision", "torchaudio", "pytorch-cuda=11.7", "-c", "pytorch", "-c" ,"nvidia"))reticulate::conda_install(envname = "r-sjsdm", packages = c("pyro-ppl", "torch_optimizer", "madgrad", "tqdm"), pip = TRUE)library(sjSDM)Any help you can provide on getting this to work on the CPU would be much appreciated. Here are the install diagnostics:
install_diagnostic()
name python
1 base C:\Users\rdel1ess\AppData\Local\anaconda3/python.exe 2 r-sjsdm C:\Users\rdel1ess\AppData\Local\anaconda3\envs\r-sjsdm/python.exe
ENV: base
torch:
packages in environment at C:\Users\rdel1ess\AppData\Local\ANACON~1:
#
Name Version Build Channel
numpy:
packages in environment at C:\Users\rdel1ess\AppData\Local\ANACON~1:
#
Name Version Build Channel
numpy 1.26.4 py311hdab7c0b_0
numpy-base 1.26.4 py311hd01c5d8_0
numpydoc 1.5.0 py311haa95532_0
ENV: r-sjsdm
torch:
packages in environment at C:\Users\rdel1ess\AppData\Local\ANACON~1\envs\r-sjsdm:
#
Name Version Build Channel
pytorch 2.3.1 py3.11_cpu_0 pytorch pytorch-cuda 11.7 h16d0643_5 pytorch pytorch-mutex 1.0 cpu pytorch pytorch-ranger 0.1.1 pypi_0 pypi torch-optimizer 0.3.0 pypi_0 pypi torchaudio 2.3.1 py311_cpu pytorch torchvision 0.18.1 py311_cpu pytorch
numpy:
packages in environment at C:\Users\rdel1ess\AppData\Local\ANACON~1\envs\r-sjsdm:
#
Name Version Build Channel
numpy 1.26.4 py311h0b4df5a_0 conda-forge
python: C:/Users/rdel1ess/AppData/Local/anaconda3/envs/r-sjsdm/python.exe libpython: C:/Users/rdel1ess/AppData/Local/anaconda3/envs/r-sjsdm/python311.dll pythonhome: C:/Users/rdel1ess/AppData/Local/anaconda3/envs/r-sjsdm version: 3.11.9 | packaged by conda-forge | (main, Apr 19 2024, 18:27:10) [MSC v.1938 64 bit (AMD64)] Architecture: 64bit numpy: C:/Users/rdel1ess/AppData/Local/anaconda3/envs/r-sjsdm/Lib/site-packages/numpy numpy_version: 1.26.4 torch: C:\Users\rdel1ess\AppData\Local\ANACON~1\envs\r-sjsdm\Lib\site-packages\torch__init__.p
NOTE: Python version was forced by use_python() function
populated config files : conda version : 24.1.2 conda-build version : 24.1.2 python version : 3.11.7.final.0 solver : libmamba (default) virtual packages : __archspec=1=x86_64 conda=24.1.2=0 cuda=12.2=0 __win=0=0 base environment : C:\Users\rdel1ess\AppData\Local\ANACON~1 (writable) conda av data dir : C:\Users\rdel1ess\AppData\Local\ANACON~1\etc\conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch package cache : C:\Users\rdel1ess\AppData\Local\ANACON~1\pkgs C:\Users\rdel1ess.conda\pkgs C:\Users\rdel1ess\AppData\Local\conda\conda\pkgs envs directories : C:\Users\rdel1ess\AppData\Local\ANACON~1\envs C:\Users\rdel1ess.conda\envs C:\Users\rdel1ess\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/24.1.2 requests/2.31.0 CPython/3.11.7 Windows/10 Windows/10.0.19045 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.6 aau/0.4.3 c/FAzFD8gRnsxwHPTusSXqpA s/seCXrVXnW-ZSZO4W9aVeHA e/UCmhitd5p_yXzqS3PoBhfA administrator : False netrc file : None offline mode : False