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ThomasDOtto / ratt

Rapid Annotation Transfer Tool
GNU General Public License v3.0
8 stars 4 forks source link

RATT transfer step fails #5

Closed 0xaf1f closed 1 year ago

0xaf1f commented 4 years ago

This may be due to new Perl versions, but we consistently see at the end of the run (using perl 5.26.2)

4: FINISHING DATA
working on ref1
Can't use an undefined value as an ARRAY reference at /<path>/ratt/main.ratt.pl line 244.
Sorry, the RATT transfer step did fail.\n
Debug information: perl /<path>/ratt/main.ratt.pl Transfer /<path>/embls/ nucmer.qry.snp nucmer.qry.filter.coords qry
/tmp/tmp.EEvaljoMNx
jean-baka commented 4 years ago

I see this bug is still open... For me, I see this error coming up when I try to do another annotation transfer on the same reference and target, in a folder in which I already performed an annotation transfer. Even if I change the prefix for the new attempted annotation transfer. So it seems it's something like an overwriting/permission issue...?

chemy-cm commented 2 years ago

This may be due to new Perl versions, but we consistently see at the end of the run (using perl 5.26.2)

So Which version of Perl we should to use？