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ThomasYeoLab / CBIG

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Compatibility of the .lut files with fsleyes #18

Closed TalyKo closed 2 years ago

TalyKo commented 3 years ago

Hello,

I’m trying to add the Schaefer_2018 atlas into FSL, following the instructions in the README file, it seems that the lut file format is not supported with fsleyes (and that the old fslview is now deprecated).

Is there some way that the atlas can be added?

Thank you in advance, Taly

rubykong commented 3 years ago

@TalyKo I just quickly checked it. It seems like the fsleyes changed a lot of settings compared with fslview. They now require a XML format for loading a new atlas. Check here for how to create a XML file: https://open.win.ox.ac.uk/pages/fsl/fsleyes/fsleyes/userdoc/customising.html#customising-atlases

We will try to provide the XML files asap. You might need to use an older version (5.0.8) of fsl for visualization if you don't want to create the XML files yourself. Will update you once we update the XML files.

Thanks a lot for reaching us!

Best, Ruby

rubykong commented 3 years ago

@TalyKo We have modified our lut files, will let you know after we released the files.

TalyKo commented 3 years ago

Thank you very much!

On Wed, May 26, 2021 at 6:59 PM Ruby Kong @.***> wrote:

@TalyKo https://github.com/TalyKo We have modified our lut files, will let you know after we released the files.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ThomasYeoLab/CBIG/issues/18#issuecomment-848896873, or unsubscribe https://github.com/notifications/unsubscribe-auth/AT5KO63LNZDZFLELA7BLQ2LTPULGRANCNFSM437H73FQ .

rubykong commented 3 years ago

@TalyKo Here is the updated readme and files: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI