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ThomasYeoLab / CBIG

MIT License
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Mapping from 17 to 7 and vice versa #33

Closed mb3152 closed 1 year ago

mb3152 commented 2 years ago

Is there an array you have that can map the ordering of the parcels in the 17 network solution to the 7 network solution, and vice versa? Basically, we have data made in the 17 network ordering, but want to know how it would look in the 7 network ordering.

rubykong commented 2 years ago

Hi Max, It's the Yeo2011_17network or Schaefer parcellation with Yeo17network ordering?

audreycluo commented 2 years ago

just following up on Max's question (which he asked on my behalf) -- it's the schaefer parcellation with with Yeo17network ordering

mb3152 commented 2 years ago

hi @rubykong, any progress on this?

rubykong commented 2 years ago

@mb3152 @audreycluo Oh yea. Forgot to reply. We do have the code to get the mapping: https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/Code/CBIG_gwMRF_index_trans_btwn2versions.m

mb3152 commented 2 years ago

I think that is a different problem than we have. My understanding is that the 7 and 17 network parcel versions are in a slightly different order (eg., node 7 in the 7network files is not node 7 in the 17 network files). Is that true?

rubykong commented 2 years ago

@mb3152 yea you are right. This script can find the mapping between any two Schaefer parcellations with same number of ROIs.

rgbayrak commented 2 years ago

It would be fantastic, if this is highlighted in the README file. Could have saved me a lot of time :D