search

ThomasYeoLab / CBIG

MIT License
586 stars 384 forks source link

Multi-echo CBIG2016 Preprocessing #42

Closed peter3200 closed 1 year ago

peter3200 commented 1 year ago

Expected situation

When the bold/001/ME_intermediate folder from Tedana is not created, an error is thrown indicating that the folder does not exist and there was an issue with Tedana. This would be very helpful for troubleshooting errors and indicating whether or not Tedana is setup correctly.

Actual situation

The logfile (CBIG_preproc_multiecho_denoise.log) indicates that Tedana finished even though no ME_intermediate folder was created:

=====================combine echos and perform multi-echo ICA using tedana ====================== tedana -d sub-35793_bld001_e1_rest_skip4_mc.nii.gz sub-35793_bld001_e2_rest_skip4_mc.nii.gz sub-35793_bld001_e3_rest_skip4_mc.nii.gz -e 12.4 34.28 56.16 --out-dir /CBIG2016_preproc_FS6/sub-35793/sub-35793/bold/001/ME_intermediate ====================== Multi-echo ICA finished. ======================

Thank you for creating this wonderful resource!

rubykong commented 1 year ago

@ShaoshiZ Can you help look into this?

ShaoshiZ commented 1 year ago

If I recall correctly, this problem occurred because CBIG_py3 was not activated when running the multiecho step.