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ThomasYeoLab / CBIG

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Possible mismatch between schaefer atlas and template? #58

Open enicolaisen opened 3 hours ago

enicolaisen commented 3 hours ago

Expected situation

Hi! I noticed that the Schaefer atlas (1000, 17N) does not perfectly overlap with the MNI template that was used when creating the atlas, according to the information of the repository. Has anybody seen this before, and has an explanation or more information about why they do not overlap perfectly? Thanks in advance!

Actual situation

See attached figure: schaefer in red-yellow (https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_17Networks_order_FSLMNI152_1mm.nii.gz) MNI template in grey (https://github.com/ThomasYeoLab/CBIG/blob/master/data/templates/volume/FSL5.0.8_MNI_templates/MNI152_T1_1mm_brain.nii.gz)

Overlap template schaefer
enicolaisen commented 3 hours ago

(here I am trying to tag Kaustubh Patil) @kaurao