Open switt4 opened 4 years ago
@switt4 The Schaefer parcellation does not depend on these softwares, it mainly contains matlab scripts. So you can ignore these warnings if you are only interested in the Schaefer2018_LocalGlobal project. You received these warnings is because some other projects in our lab might be affected by different versions of these softwares. We did consider making a docker container, but we haven't seen any one suitable for matlab scripts. Would appreciate if you have some suggestions!
@switt4 BTW, you can always try to run the example we provide in Schaefer project to see if you can replicate results as the example results: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/examples
I am trying to help a researcher set up the CBIG-0.10.2-Schaefer2018_LocalGlobal repository on a server running Ubuntu 18.04.3. I set up all of the paths for the required software libraries in a copy of the CBIG_gwMRF_tested_config.sh file. (The researcher is primarily interested in the Schaeffer2018_LocalGlobal stable project.)
After following all of the steps in the README.md, I sourced my .bashrc and was confronted with warnings that all of the versions of the required software that were already installed on the researcher's local server were the incorrect ones:
Nowhere previously in any of the documentation do you specify which versions of these dependent softwares are required.
Given that your tool has such specific requirements, have you considered making a singularity and/or docker container with the correct versions? Or can I just safely ignore these warnings and continue with the newer versions of the dependent softwares?
Thanks, suzanne