Open Hannah1746 opened 1 year ago
Hello.
I am trying to run:
require(RIdeogram) library(devtools)
karyotype <- read.table('karyotype.txt', header = T) synteny <- read.table('synteny.txt', header = T)
ideogram(karyotype = karyotype, synteny = synteny)
My files look like: karyotype.txt Chr Start End fill species size color Myx_Chr22 1 47849308 139b08 B 9.5 139b08 Myx_Chr43 1 38023304 139b08 B 9.5 139b08 Myx_Chr27 1 46332826 078dd8 A 9.5 078dd8 Myx_Chr42 1 38410338 078dd8 A 9.5 078dd8
synteny.txt Chr1 start1 end1 Chr2 start2 end2 22 14531668 14595454 27 32941637 32994325 22 14811096 15022136 27 32437958 32709008 22 15667970 15705569 27 31616867 31646678 ...
When I run this code I get this error:
Error in [<-.data.frame(tmp, i, 8, value = c(B = NAreal)) : new columns would leave holes after existing columns
I am just trying to understand what is going on.
Thank you for your time.
Hello.
I am trying to run:
require(RIdeogram) library(devtools)
karyotype <- read.table('karyotype.txt', header = T) synteny <- read.table('synteny.txt', header = T)
ideogram(karyotype = karyotype, synteny = synteny)
My files look like: karyotype.txt Chr Start End fill species size color Myx_Chr22 1 47849308 139b08 B 9.5 139b08 Myx_Chr43 1 38023304 139b08 B 9.5 139b08 Myx_Chr27 1 46332826 078dd8 A 9.5 078dd8 Myx_Chr42 1 38410338 078dd8 A 9.5 078dd8
synteny.txt Chr1 start1 end1 Chr2 start2 end2 22 14531668 14595454 27 32941637 32994325 22 14811096 15022136 27 32437958 32709008 22 15667970 15705569 27 31616867 31646678 ...
When I run this code I get this error:
Error in [<-.data.frame(tmp, i, 8, value = c(B = NAreal)) : new columns would leave holes after existing columns
I am just trying to understand what is going on.
Thank you for your time.