HDF5 file unable to be created/opened

[Jing0283]

I met this issue during Batch Processing Multiple Files, using both the example files as well as my own local files (in .avi and .mp4 format) ERROR: Unable to open/create file '/home/tierpsy_user/Tmp/MaskedVideos/cam2+ob1-1.hdf5' Traceback (most recent call last): File "/tierpsy-tracker/tierpsy/processing/ProcessWorker.py", line 108, in ProcessWorker(args, cmd_original = subprocess.list2cmdline(sys.argv)) File "/tierpsy-tracker/tierpsy/processing/ProcessWorker.py", line 38, in init self.execAllPoints() File "/tierpsy-tracker/tierpsy/processing/ProcessWorker.py", line 66, in execAllPoints cmd_original = self.cmd_original) File "/tierpsy-tracker/tierpsy/processing/trackProvenance.py", line 28, in execThisPoint func(argkws) File "/tierpsy-tracker/tierpsy/analysis/compress/processVideo.py", line 142, in processVideo compressVideo(video_file, masked_image_file, compress_vid_param) File "/tierpsy-tracker/tierpsy/analysis/compress/compressVideo.py", line 243, in compressVideo save_full_interval = save_full_interval) File "/tierpsy-tracker/tierpsy/helper/params/get_defaults.py", line 48, in compress_defaults fps = _read_correct_fps(fname, expected_fps) File "/tierpsy-tracker/tierpsy/helper/params/get_defaults.py", line 23, in _read_correct_fps fps_out = read_unit_conversions(fname)[0] File "/tierpsy-tracker/tierpsy/helper/params/read_attrs.py", line 188, in read_unit_conversions reader = AttrReader(fname, dflt) File "/tierpsy-tracker/tierpsy/helper/params/read_attrs.py", line 54, in init self.field = self._find_field() File "/tierpsy-tracker/tierpsy/helper/params/read_attrs.py", line 59, in _find_field with tables.File(self.file_name, 'r') as fid: File "/home/tierpsy_user/.local/lib/python3.6/site-packages/tables/file.py", line 778, in init self._g_new(filename, mode, params) File "tables/hdf5extension.pyx", line 492, in tables.hdf5extension.File._g_new tables.exceptions.HDF5ExtError: HDF5 error back trace

File "H5F.c", line 509, in H5Fopen unable to open file File "H5Fint.c", line 1400, in H5F__open unable to open file File "H5Fint.c", line 1615, in H5F_open unable to lock the file File "H5FD.c", line 1640, in H5FD_lock driver lock request failed File "H5FDsec2.c", line 941, in H5FD_sec2_lock unable to lock file, errno = 11, error message = 'Resource temporarily unavailable'

End of HDF5 error back trace

I have checked the temporary dir box and all other processes have been ceased to prioritise this analysing process.

Thank you very much for the help!

[Jing0283]

I'm using Windows 11. The docker installation and tierpsy.ps1 creation have been successful by far.

[WeheliyeHashi]

Hi Jing, make sure to use a 'include pattern' that matches your video types :) reading from the text you posted here (thanks for including that) it was .hdf5, it should work for your Avi videos if you set it to .avi.

[WeheliyeHashi]

fixed