Add support for numpy2

[kounelisagis]

Following the official migration guide: https://numpy.org/devdocs/numpy_2_0_migration_guide.html

• change to latest ruff version.
• add the NPY201 rule to pyproject.toml.
• replace removed members.

Also:

• in setup.py, instead of using resource_filename(), use np.get_include() which works both for numpy1 and numpy2 and is used by large projects: https://github.com/pandas-dev/pandas/blob/58461fef2315d228d08f65f8a9430e9294d65b31/setup.py#L559.
• use np.set_printoptions(legacy='1.21') (numpy-docs) because there are changes in __repr__. As shown below:

  >>> np.__version__
  '2.0.0rc2'
  >>> np.int32(1)
  'np.int32(1)'

  >>> np.__version__
  '1.26.4'
  >>> np.int32(1)
  '1'

This caused examples to fail: https://github.com/TileDB-Inc/TileDB-Py/blob/dev/tiledb/fragment.py#L79.

Questions to discuss:

1. Should np.set_printoptions exist for specific cases? Right now it's for the whole package.
2. Daily tests include numpy2. Locally the package is build as normal and all the tests successfully. Should numpy2 exist in CI?

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[sc-46950]