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TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
88 stars 16 forks source link

Finalize stats arrays to optimize fragment layout #539

Closed gspowley closed 1 year ago

gspowley commented 1 year ago

During ingestion, finalize the stats arrays so each fragment contains data from one chromosome or data from a set of pseudo contigs.

Add mamba to speed up python CI.

shortcut-integration[bot] commented 1 year ago

This pull request has been linked to Shortcut Story #30349: VCF pseudo-contigs are not isolated in stats array fragments.