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TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
85 stars 14 forks source link

Sort reads during sample delete #593

Closed gspowley closed 11 months ago

gspowley commented 11 months ago

When deleting a sample, the records need to be read in sorted order so the stats arrays can be updated without violating the global order.

shortcut-integration[bot] commented 11 months ago

This pull request has been linked to Shortcut Story #35030: VCF sample delete needs sorted reads.

gspowley commented 11 months ago

[sc-35314]

shortcut-integration[bot] commented 11 months ago

This pull request has been linked to Shortcut Story #35314: Use micromamba in VCF CI.