search

TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
83 stars 13 forks source link

Allow calls with missing genotypes to pass the IAF filter #602

Closed gspowley closed 9 months ago

gspowley commented 9 months ago

This fixes an issue where a variant with all GT values missing (for example, a gVCF block) would not pass the IAF filter.

shortcut-integration[bot] commented 9 months ago

This pull request has been linked to Shortcut Story #35776: ref/ref calls are being represented as ./. in the presence of a NON_REF allele.

leipzig commented 9 months ago

I'm ok with approving this if a unit test can be earmarked