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TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
83 stars 13 forks source link

Support reads using a BED array #629

Closed gspowley closed 7 months ago

gspowley commented 7 months ago

This PR enables support for reads using a BED array.

A BED array is a TileDB array with the following columns. Name Type Contents
metadata["alias contig"] string region chromosome
metadata["alias start"] uint64_t regions start, 0-based, inclusive
metadata["alias end"] uint64_t regions end, 0-based, inclusive

Note - column names are stored as aliases in metadata.

shortcut-integration[bot] commented 7 months ago

This pull request has been linked to Shortcut Story #37890: Support VCF read using a BED array.