The nightly build job failed on Thursday (2023-12-21)

[github-actions[bot]]

The nightly build job failed on Thursday (2023-12-21) in run 7295697061

[awenocur]

another segfault

[awenocur]

As expected, this was intermittent.

[github-actions[bot]]

The nightly build job failed on Tuesday (2024-01-09) in run 7469765081

[jdblischak]

The nightly osx-libtiledb-release-2.18 build also failed on my fork. Do we know what this error is about? It's surprising it happened on the release and not dev build

Also, let's try to close these Issues once they are resolved so that new Issues will be opened for new problems

==================================== ERRORS ====================================
___________________ ERROR collecting tests/test_tiledbvcf.py ___________________
ImportError while importing test module '/Users/runner/work/TileDB-VCF/TileDB-VCF/TileDB-VCF/apis/python/tests/test_tiledbvcf.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/Users/runner/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_tiledbvcf.py:11: in <module>
    import tiledb
/Users/runner/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/tiledb/__init__.py:39: in <module>
    from .array_schema import ArraySchema
/Users/runner/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/tiledb/array_schema.py:8: in <module>
    import tiledb.cc as lt
E   ImportError: dlopen(/Users/runner/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/tiledb/cc.cpython-310-darwin.so, 0x0002): Symbol not found: (_tiledb_group_get_member_by_index_v2)
E     Referenced from: '/Users/runner/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/tiledb/cc.cpython-310-darwin.so'
E     Expected in: '/Users/runner/work/TileDB-VCF/TileDB-VCF/install/lib/libtiledb.dylib'

[github-actions[bot]]

The nightly build job failed on Wednesday (2024-01-10) in run 7483678811

[github-actions[bot]]

The nightly build job failed on Thursday (2024-01-11) in run 7497364557

[johnkerl]

@jdblischak two thoughts:

• The symbol tiledb_group_get_member_by_index_v2 was introduced in core 2.19.
• As of yesterday we have https://github.com/TileDB-Inc/TileDB-VCF/releases/tag/0.28.0 which depends on 2.19.