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TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
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Sample stats improvements #708

Closed gspowley closed 2 months ago

gspowley commented 2 months ago
  1. Add option to disable sample stats at dataset creation time.
  2. Support deleting a sample from the array.
  3. Handle missing DP and GQ properly.
  4. Tests for all of the above.
leipzig commented 2 months ago

this is fine as long as we don't expect the same thing to happen to other fields

gspowley commented 2 months ago

this is fine as long as we don't expect the same thing to happen to other fields

All other stats are based on GT and we do handle missing GT values properly.