TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.
https://tiledb-inc.github.io/TileDB-VCF/
MIT License
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The nightly build job failed on Wednesday (2024-05-29) #726

Closed github-actions[bot] closed 1 month ago

github-actions[bot] commented 1 month ago

The nightly build job failed on Wednesday (2024-05-29) in run 9296289779

jdblischak commented 1 month ago

Only the ubuntu-latest-libtiledb-dev job failed last night. There was a single test failure for tiledbvcf-py:

=========================== short test summary info ============================
FAILED tests/test_tiledbvcf.py::test_ingestion_tasks - tiledb.cc.TileDBError: [TileDB::Filter] Error: FilterBuffer error; could not read requested byte count.
============ 1 failed, 52 passed, 2 skipped, 165 warnings in 33.27s ============
jdblischak commented 1 month ago

I observed the exact same error in the nightly running on my fork. However, interestingly, my fork was behind by two commits, so it checked out commit 7bc5d5dddc467f19842157725cabf6b53b05e8d9. Thus this new test failure wasn't caused by the recently merged #724

jdblischak commented 1 month ago

Strangely though, the tiledbvcf-py tests all passed in last night's centralized nightlies build

================= 53 passed, 2 skipped, 169 warnings in 35.25s =================
jdblischak commented 1 month ago

PR https://github.com/TileDB-Inc/TileDB/pull/5028 may fix the test failure

jdblischak commented 1 month ago

I manually triggered a new run now that https://github.com/TileDB-Inc/TileDB/pull/5028 was merged

jdblischak commented 1 month ago

Fixed! :tada: