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TileDB-Inc
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tiledbsc
Single-cell data structures in TileDB
https://tiledb-inc.github.io/tiledbsc/
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errors when assay_key is empty
#105
maddygriz
closed
8 months ago
1
[WIP] Use spdl for logging instead of `message()`
#104
mojaveazure
opened
8 months ago
0
[WIP] Use spdl for logging instead of `message()`
#103
mojaveazure
opened
8 months ago
0
Update group member cache after removing a member
#102
aaronwolen
closed
1 year ago
0
Cannot download your package
#101
ccnawrocki
closed
1 year ago
9
Revert back to CI use of tiledb-r from CRAN
#100
eddelbuettel
closed
1 year ago
1
Accommodate incorrect validity map values
#99
aaronwolen
closed
1 year ago
1
Update pkgdown CI actions
#98
aaronwolen
closed
1 year ago
0
Fix CI builds
#97
aaronwolen
closed
1 year ago
0
`Error in SummarizedExperiment::SummarizedExperiment(assays = assay_mats, : the rownames and colnames of the supplied assay(s) must be NULL or identical to those of the SummarizedExperiment object (or derivative) to construct`
#96
multimeric
opened
1 year ago
2
Support creation from in-memory `SingleCellExperiment`.
#95
multimeric
opened
1 year ago
3
Relationship to `single-cell-data/TileDB-SOMA`?
#94
multimeric
closed
1 year ago
2
[r] Set `r.legacy_validity_mode` config
#93
eddelbuettel
closed
1 year ago
2
Error creating SOMA from Seurat with empty matrices
#92
adomingues
closed
1 year ago
8
Release 0.1.5
#91
aaronwolen
closed
1 year ago
0
Update setup-r gha to v2
#90
aaronwolen
closed
1 year ago
2
Make SOMAs and X layers selectable when converting to a Seurat object
#89
aaronwolen
closed
1 year ago
1
select assays argument for `to_seurat`
#88
dan11mcguire
closed
1 year ago
1
Release 0.1.4
#87
aaronwolen
closed
1 year ago
1
Expand batched reader support to AnnotationMatrix arrays
#86
aaronwolen
closed
1 year ago
2
add batch_mode option to to_seurat_object function
#85
dan11mcguire
opened
2 years ago
0
implement batch_mode argument for `to_seurat_object()` and `to_matrix()`
#84
dan11mcguire
opened
2 years ago
0
Don't use default assay name for Seurat objects
#83
aaronwolen
closed
2 years ago
1
SOMA collection : to_seurat() not bringing back all assays
#82
dan11mcguire
closed
2 years ago
2
Error when using "from_anndata_update_obs_and_var"
#81
royassis
closed
2 years ago
1
Add transpose option to reverse order of `AssayMatrix` dimensions
#80
aaronwolen
opened
2 years ago
1
Support multi-dimension matrix padding
#79
aaronwolen
closed
2 years ago
0
Change AssayMatrix dimension order
#78
aaronwolen
closed
2 years ago
0
Add quickstart vignette
#77
aaronwolen
closed
2 years ago
2
Makefile for rendering vignettes as Jupyter notebooks
#76
aaronwolen
closed
2 years ago
0
Optimize COO conversion
#75
aaronwolen
closed
2 years ago
1
Don't split path for checking object existence with tiledb:// URI
#74
Shelnutt2
closed
2 years ago
1
Fix COO conversion of unordered dgtMatrix
#73
aaronwolen
closed
2 years ago
1
Add batch mode to assay matrix readers
#72
aaronwolen
closed
2 years ago
2
Support group member deletion
#71
aaronwolen
closed
2 years ago
2
Release 0.1.3
#70
aaronwolen
closed
2 years ago
2
Disable duplicates for AnnotationArrays
#69
aaronwolen
closed
2 years ago
1
Update tiledb-r to 0.14
#68
aaronwolen
closed
2 years ago
1
SOMACollection-level dimension slicing and attribute filtering
#67
aaronwolen
closed
2 years ago
2
Write object-type and SOMA-version metadata
#66
johnkerl
closed
2 years ago
0
Implement SOMA-level attribute filtering
#65
aaronwolen
closed
2 years ago
2
SOMA-level dimension slicing
#64
aaronwolen
closed
2 years ago
3
Add internal object reference to TileDBArray class
#63
aaronwolen
closed
2 years ago
2
Implement TileDBObject base class
#62
aaronwolen
closed
2 years ago
2
Finding from CXG RDS ingest
#61
johnkerl
closed
2 years ago
0
Migrate from misc to uns
#60
aaronwolen
closed
2 years ago
2
Adopt SOMA naming scheme
#59
aaronwolen
closed
2 years ago
2
Improve handling of Seurat objects with empty cell identities
#58
aaronwolen
closed
2 years ago
1
Release 0.1.1
#57
aaronwolen
closed
2 years ago
2
Support storage of Seurat cell identities
#56
aaronwolen
closed
2 years ago
2
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