Open MattGFFI opened 1 year ago
Hi @MattGFFI and @TillMacher,
I also encountered the same error [1, 2] while running both "apscale_gui" and "TTT". However, my colleague recommended using writer.close()
instead of writer.save()
in the following files which resolved the issue:
/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/apscale_gui/settings_file.py
/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/taxontabletools/taxon_table_filtering.py
Btw, downgrading the latest version of pandas might be an another solution.
best, Onur.
[1]:
File "/usr/local/bin/apscale_gui", line 8, in <module>
sys.exit(main())
File "/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/apscale_gui/__main__.py", line 534, in main
apply_settings(settings_file, settings)
File "/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/apscale_gui/settings_file.py", line 77, in apply_settings
writer.save()
AttributeError: 'XlsxWriter' object has no attribute 'save'
[2]:
File "/Library/Frameworks/Python.framework/Versions/3.9/bin/taxontabletools", line 33, in <module>
sys.exit(load_entry_point('taxontabletools==1.4.8', 'console_scripts', 'taxontabletools')())
File "/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/taxontabletools/__main__.py", line 1460, in main
taxon_filter(taxon_table_2_path, check_list, filter_taxonomic_level, appendix_name, threshold, path_to_outdirs, taxon_filter_method)
File "/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/taxontabletools/taxon_table_filtering.py", line 119, in taxon_filter
writer.save()
AttributeError: 'XlsxWriter' object has no attribute 'save'
Issue: Attempting to work through the tutorial using the tutorial files. However, whenever I reach try to merge replicates using the 'replicate consistency' function or use table filtering to extract Arthropods. I am met with the following message: "Unexpected error: <class 'AttributeError'>.