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TimD1
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vcfdist
vcfdist: Accurately benchmarking phased variant calls
GNU General Public License v3.0
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command terminated by signal 9
#30
csuzhang
opened
1 month ago
2
Inconsistent classification of same variant
#29
mbhall88
closed
2 months ago
2
Contig not in reference FASTA or position out of range (generate_str)
#28
mbhall88
closed
3 months ago
2
Very high memory usage when realigning
#27
mbhall88
closed
4 months ago
5
QUERY_TP and precision calculations
#26
sq101
closed
4 months ago
3
Unphased evaluation?
#25
rlorigro
opened
5 months ago
4
Cannot start an already-running timer (writing)
#24
mcolpus
closed
5 months ago
1
Variant is same as truth, but assigned truth FN and query FP
#22
mbhall88
closed
6 months ago
9
Add bcftools to docker image
#21
mbhall88
closed
7 months ago
3
No logging colours if writing to file
#20
mbhall88
closed
7 months ago
1
Contig not in truth
#19
mbhall88
closed
6 months ago
2
A few minor (but quality-of-life) improvements, some questions too
#18
GuillaumeHolley
closed
7 months ago
5
Bioconda package
#17
mbhall88
closed
6 months ago
4
analysis-v2 questions
#16
ACEnglish
closed
5 months ago
4
precision-recall-summary.tsv formatting
#15
nate-d-olson
closed
7 months ago
3
excluding lstdc++fs
#14
allyssonallan
closed
7 months ago
1
Fix incredibly rare edge case when assigning credit to variants at same position
#13
TimD1
closed
6 months ago
1
Incorrect ploidy detection for chrUN* ctgs
#12
TimD1
closed
11 months ago
0
Supercluster output in truth.tsv and query.tsv incorrect
#11
TimD1
closed
1 year ago
0
Handle all possible input alleles
#10
TimD1
closed
1 year ago
0
Allow users to select variants using FILTER column
#9
TimD1
closed
10 months ago
0
"terminate called after throwing an instance of 'std::out_of_range'"
#8
MariaNattestad
closed
1 year ago
2
Errors during `make`
#7
MariaNattestad
closed
1 year ago
3
Infinite loop during backtracking in rare cases
#6
TimD1
closed
1 year ago
0
Document the format of the output file
#5
jdidion
closed
1 year ago
0
Support stratified variant comparison
#4
jdidion
closed
1 year ago
4
What about hap.py xcmp?
#3
jdidion
closed
1 year ago
4
How does it deal with sex chromosomes?
#2
jdidion
closed
1 year ago
7
Compile error on Ubuntu
#1
jdidion
closed
1 year ago
1