sigGenes from a cluster

[TinclG]

script 3.1_TopGO_cluster3

objects used: c2 - which are the gene names and cluster number from the cluster 4

• [ ] would probably need to add the column with pvalues ?

sigGenes <- sigGenes(GOdata)

AnnoList <- lapply(tab$"GO.ID", 
                      function(x) as.character(list(genesInTerm(object = GOdata, whichGO = x))))
SigList <- lapply(AnnoList, function(x) intersect(x, sigGenes))

sigGenes doesnt return lists of genes but rather a vector of all genes Results: SigList

[[1]]
character(0)

[[2]]
character(0) ...

[TinclG]

Solved