TinkerTools / poltype2

Poltype 2: Automated Parameterization and Free Energy Prediction for AMOEBA
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Unable to create poltype2 conda environment due to conflicts between packages #45

Closed JMorado closed 5 months ago

JMorado commented 6 months ago

Hello,

I'm encountering difficulties installing the conda environment required for running poltype2. I've tried both the conda env create -f environment.yml method and the approach outlined here, but both have resulted in conflicts between packages.

Do you have any suggestions on how to overcome this? Is it possible to provide a more general env.yml file that doesn't explicitly list every package (including dependencies of main packages)? Ideally, this env.yml file should not explicitly specify the packages builds, as this often ties them to specific architectures and operating systems, making them less portable in many instances.

Thank you in advance for your assistance.

JMorado commented 5 months ago

In case it is useful to someone, I have managed to create the conda environment required to run poltype by using the following yaml file:

name: poltype2
channels:
  - conda-forge
  - rdkit
  - salilab
dependencies:
  - micromamba
  - psi4
  - geometric
  - mdanalysis
  - openbabel
  - svgutils
  - cairosvg
  - psutil
  - mdtraj
  - openpyxl
  - pdb2pqr
  - pdbfixer
  - rdkit
  - modeller
  - gdma
  - pip
  - pip:
    - pymbar
    - PyAstronomy