TissueEngineeringLab / MyoFInDer

Python interface for automatic calculation of the fusion index in muscle cell cultures
https://tissueengineeringlab.github.io/MyoFInDer/
GNU General Public License v3.0
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Dark nuclei not being correctly detected #14

Closed WeisLeDocto closed 11 months ago

WeisLeDocto commented 11 months ago

On images where very dark nuclei are present, these nuclei are not being detected properly and there is no way to adjust a detection threshold. See the problem on the picture below : dark_not_detected It seems that the nuclei_threshold setting was intended to handle these situations, but it was removed in 92b069b4 because it was not correctly implemented. This commit should obviously be reverted, and proper fixes added to bring back the functionality.