TissueImageAnalytics tiatoolbox issues

TissueImageAnalytics / tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

https://warwick.ac.uk/tia

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issues

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SemanticSegmentor predict not running with .dcm WSI slides

#886 fastorik opened 12 hours ago
0
[skip ci] :memo: Update Jupyter Notebooks for the New Release

#885 shaneahmed opened 14 hours ago
1
Using fcn_resnet50_unet-bcss for transfer learning

#884 Himanshunitrr opened 1 day ago
0
Refine patch extractor error message

#883 Jiaqi-Lv opened 4 days ago
1
♻️ Update Changes from New Engine Design

#882 shaneahmed closed 5 days ago
1
Misleading error message

#881 Jiaqi-Lv opened 3 weeks ago
0
:technologist: pre-commit autoupdate

#880 pre-commit-ci[bot] closed 1 week ago
1
Using `DeepFeatureExtractor` for slides which require manual specification of `power` and `resolution`

#879 GeorgeBatch closed 1 week ago
1
Modify progress bar for class NucleusInstanceSegmentor so you can track overall inference progress

#878 TheFaimous-NoahDolev closed 1 week ago
1
:bug: Fix issues with `numpy>=2.0.0`

#877 shaneahmed opened 1 month ago
0
:pushpin: Pin `numpy<2.0.0`

#876 shaneahmed closed 1 month ago
1
✨ Add on-the-fly Registered Slide Visualization

#875 measty opened 1 month ago
0
Mask `units` and `resolution` vs `IOSegmentorConfig.save_resolution`

#874 GeorgeBatch opened 1 month ago
3
mpp or objective power not found even if provided for Semantic segmentation

#873 lisafournier closed 1 month ago
2
Extract the Patch from a PNG image without knowing MPP information

#872 aahsan045 closed 1 week ago
3
🐛 Add Warning for `VahadaneExtractor` Algorithm Instability

#871 mostafajahanifar closed 2 weeks ago
2
:pushpin: Pin `bokeh` version to less than 3.6.0

#870 shaneahmed closed 1 month ago
1
🐛 Fix `CITATION.cff` to Make it Compatible with `cffconvert`

#869 Alon-Alexander closed 1 month ago
5
:technologist: `pre-commit` autoupdate

#868 pre-commit-ci[bot] closed 1 month ago
1
:art: Refactor `ModelABC` to Help Use Default Torch Models

#867 shaneahmed opened 2 months ago
1
:sparkles: Define `SemanticSegmentor` with the New `EngineABC`

#866 shaneahmed opened 2 months ago
1
✨ Add `PatchPredictor` Engine

#865 shaneahmed closed 6 days ago
3
:bug: Fix `mypy` Type Checks for `cli/common.py`

#864 shaneahmed closed 2 months ago
1
Registration ValueError: Mismatch of shape between image and its corresponding mask.

#863 sm-ak-r33 closed 1 month ago
4
:hammer: Update test build for `Ubuntu-24.04`

#862 shaneahmed closed 2 months ago
1
:heavy_minus_sign: Remove `jinja2` dependency

#861 shaneahmed closed 2 months ago
0
resnet18-idars-tumour.pth model not available

#860 24hourssss closed 2 months ago
2
Warwick URLs refusing connection for sample downloads in Semantic Segmentation Notebook

#859 mhwilder closed 2 months ago
1
fcn_resnet50_unet-bcss.pth model not available (connection refused)

#858 uladzislauivanou closed 2 months ago
2
[pre-commit.ci] pre-commit autoupdate

#857 pre-commit-ci[bot] closed 2 months ago
1
🆕 Integrate Foundation Models Available VIA `timm`: `UNI`, `Prov-GigaPath`, `H-optimus-0`

#856 GeorgeBatch closed 1 week ago
18
Integrate foundation models available through `timm`: UNI, Virchow, Hibou, H-optimus-0, etc.

#855 GeorgeBatch closed 1 week ago
1
📝 Add `WSIReader` Type Annotation to `input_img` for `PatchExtrator`

#854 Jiaqi-Lv closed 2 months ago
1
I can't download the pre-training model

#853 24hourssss closed 2 months ago
3
FileNotFoundError When Running HoVer-Net on WSI

#852 tjbencomo closed 1 month ago
4
[pre-commit.ci] pre-commit autoupdate

#851 pre-commit-ci[bot] closed 3 months ago
1
🐛 Fix Immutable Output from `WSIReader`

#850 mostafajahanifar closed 3 months ago
1
Documentation for `PatchExtractor` is inconsistent

#849 Jiaqi-Lv closed 2 months ago
0
is there a way to turn off warning?

#848 ml-and-ml closed 3 months ago
2
[pre-commit.ci] pre-commit autoupdate

#847 pre-commit-ci[bot] closed 3 months ago
1
☑️ Add `mypy` Checks in `tiatoolbox/cli`

#846 Jiaqi-Lv closed 2 months ago
1
:bug: Fix `test_dsl` for `pytest`>=8.3.0

#845 shaneahmed closed 3 months ago
1
Nucleus Detection gives error

#844 ankana999 closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#843 pre-commit-ci[bot] closed 3 months ago
1
🧑‍💻 Fix `mypy` Type Error in `tiatoolbox/tools`

#842 Jiaqi-Lv closed 3 months ago
1
🆕 Address `TIAViz` Review Comments

#841 measty opened 3 months ago
0
KeyError unset_removal_flag function (line 430) in NucleusInstanceSegmentor

#840 FraukeWilm closed 3 months ago
2
How to save images as TIFF files with metadata preserved

#839 ziyuanzhao2000 closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#838 pre-commit-ci[bot] closed 3 months ago
1
Image reader `read_region` returns read-only np.ndarray

#837 ziyuanzhao2000 closed 3 months ago
1