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TobiTekath / DTUrtle

Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
https://tobitekath.github.io/DTUrtle
GNU General Public License v3.0
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plot_transcripts_view with local genome file #7

Closed anilthanki closed 1 year ago

anilthanki commented 2 years ago

A genome for organisms of interest is always not available on UCSC so it will be good to be able load local genome to be able to plot transcripts view.

TobiTekath commented 2 years ago

Hi @anilthanki,

please excuse the long response time. You are actually able to use the genome annotation of your choice and are not restricted to UCSC. The UCSC genome name is only used to fetch the appropriate ideograms.

If you set genome=NULL in plot_transcripts_view() it should work flawlessly.

Best, Tobi