Closed ahmed-alhindawi closed 4 years ago
See #56 - let's continue discussion there. I'll close this PR for the meantime. Also note that only https://github.com/Tobias-Fischer/rt_gene/pull/57/commits/8e68ec72ea8c8b46c3c22c7e034b5ee4c14ceadb seems to be relevant for this PR.
Hey @ngageorange , Now that the files are fixed, I launch the new training on beginator :)
As per #56 The cleaning was done using the following R code (sorry, it was easier for me!)
library(tidyverse) files <- list.files(path="/home/ahmed/catkin_ws/src/rt_gene/rt_bene_dataset", pattern="*.csv", full.names=TRUE, recursive=FALSE) lapply(files, function(x) { df <- read.csv(x, header=FALSE) df_clean <- df %>% group_by(V1) %>% summarise(V2_clean = mean(V2)) %>% filter(V2_clean == 0.0 | V2_clean == 1.0) write.table( df_clean, file=x, sep=",", col.names=FALSE, row.names=FALSE) })
I would suggest that the networks would need re-training on this dataset.
@Twarz could you have a look please?