We need to make customized interactomes for each NetPath pathway, which removes incoming edges to receptors and outgoing edges from TFs. These should be generated and stored in a directory, rather than computed on-the-fly.
This may dramatically affect some of the methods that return small subgraphs (PCSF, BowTieBuilder, ResponseNet).
I have code to do this and can integrate when I'm done with the methods.
We need to make customized interactomes for each NetPath pathway, which removes incoming edges to receptors and outgoing edges from TFs. These should be generated and stored in a directory, rather than computed on-the-fly.
This may dramatically affect some of the methods that return small subgraphs (PCSF, BowTieBuilder, ResponseNet).
I have code to do this and can integrate when I'm done with the methods.