Closed mjacksonhill closed 2 months ago
This can be fixed by echoing the following 2 lines to /etc/default/locale
inside the container:
echo "LC_ALL=en_US.UTF-8" >> /etc/default/locale
echo "LANG=en_US.UTF-8" >> /etc/default/locale
I'm pushing this to the containers as well, but they might take a bit of time to sync to Docker hub
This is now available on Docker hub for the tags tobybaril:earlgrey_dfam3.7:latest
and tobybaril:earlgrey_dfam3.7:v4.4.0
I'm using the latest singularity container that still uses DFAM 3.7, produced with
singularity pull docker://tobybaril/earlgrey:latest
. I am executing the analysis on a cluster using slurm.My run logs are filled with
This isn't a huge issue but I am wondering if there is anything I can do to rectify it, as this message, repeated over and over, occupies a major portion of my logs. It seems as if I cannot install any packages within the singularity container to fix the issue.
here's the output log from the run I did.